Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0968
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 35 0.046
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass... 32 0.43
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass... 32 0.43
Z75546-5|CAA99893.2| 335|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical pr... 29 3.0
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF039720-2|AAB96698.1| 180|Caenorhabditis elegans C.elegans hom... 29 4.0
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 28 7.0
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 28 7.0
U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical pr... 27 9.3
U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical pr... 27 9.3
U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical pr... 27 9.3
U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical protein
C33B4.3a protein.
Length = 1110
Score = 35.1 bits (77), Expect = 0.046
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 309 WKYKVVVDWTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFVQ----RM 476
+++K V W+ DD + W+ S+ +SEY F + R+ G LR R F Q R+
Sbjct: 1040 FEHKKVDVWSVDDVIGWL----SSLHLSEYTPAFRSQRINGRCLRQCDRSRFTQLGVTRI 1095
Query: 477 AH 482
AH
Sbjct: 1096 AH 1097
>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily assigned
gene nameprotein 137, isoform b protein.
Length = 1321
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 333 WTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFV 467
WT ++ +W+ SIG+SEY F + G +L +++R D +
Sbjct: 1172 WTSEEVCAWL----SSIGMSEYGSTFRKNDIQGSELMHLERSDIM 1212
>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily assigned
gene nameprotein 137, isoform a protein.
Length = 1372
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 333 WTEDDTVSWIVDTAQSIGISEYDIPFFNYRVTGLDLRNMKREDFV 467
WT ++ +W+ SIG+SEY F + G +L +++R D +
Sbjct: 1223 WTSEEVCAWL----SSIGMSEYGSTFRKNDIQGSELMHLERSDIM 1263
>Z75546-5|CAA99893.2| 335|Caenorhabditis elegans Hypothetical
protein R05D11.6 protein.
Length = 335
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 449 HVP*IQASHSVVKERYIVFTDTYALGCVDYPRNCII 342
HV I + +RY+ F T++ CVD PR+C I
Sbjct: 160 HVNKINQKIEITIDRYVAFRHTFSQYCVD-PRDCAI 194
>Z79599-1|CAB01871.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 330 DWTEDDTVSWIVDTAQSIGISEYDIPFFNY-RVTGLDLRNMKREDFVQR 473
+W DD V+W++D A+ I ++ + ++G ++ M F++R
Sbjct: 138 EWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIER 186
>Z79597-3|CAB01862.4| 493|Caenorhabditis elegans Hypothetical
protein C33A11.4 protein.
Length = 493
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 330 DWTEDDTVSWIVDTAQSIGISEYDIPFFNY-RVTGLDLRNMKREDFVQR 473
+W DD V+W++D A+ I ++ + ++G ++ M F++R
Sbjct: 138 EWLVDDVVAWMLDVAKRHNIPFEEMNMHKFAMLSGQEMLTMSERCFIER 186
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 28.7 bits (61), Expect = 4.0
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Frame = +3
Query: 66 NKMIDYARPFEQSTCDIYYTQTTSAPTRLDDFQVFRRGNASHIYG--NYYSNPSYDAYEE 239
N +I YA FE Y A QV G H+ G ++P YD
Sbjct: 348 NILIFYANKFETLIRKDSYFTIMLADLVKTVRQVCIAGINHHVDGLMRKMTSPHYDLLPV 407
Query: 240 PEIENAANVYHTLVS 284
PE+ ++YH L+S
Sbjct: 408 PEVRQCLSLYHGLIS 422
>AF039720-2|AAB96698.1| 180|Caenorhabditis elegans C.elegans
homeobox protein 12 protein.
Length = 180
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/74 (35%), Positives = 35/74 (47%)
Frame = +1
Query: 364 STQPRA*VSVNTIYRSLTTE*LAWIYGT*SVKTSSNGWPIQAWTLSLRGR*EITFSTDST 543
ST P + V+ + Y SL L IY ++ S N W QAW R R FS++
Sbjct: 67 STSPTSTVTPLSAYTSLVQPVLPLIYDHLALTYSVNAW--QAWGKMRRPR--TAFSSEQL 122
Query: 544 LD*MKICSDNLQYL 585
+ K SDN +YL
Sbjct: 123 VQLEKQFSDN-RYL 135
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 HT-RLNEDMFRQSSIFRYAESEPYHHEQQTMLDLDAADHKNRMYASD 677
HT +N D + QSS FR A ++ Q T++ D H+N +Y+ +
Sbjct: 992 HTLNVNTDDWSQSSDFRPAYAKEPSPLQGTVIRGDGRSHRNHVYSRE 1038
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 540 HT-RLNEDMFRQSSIFRYAESEPYHHEQQTMLDLDAADHKNRMYASD 677
HT +N D + QSS FR A ++ Q T++ D H+N +Y+ +
Sbjct: 1163 HTLNVNTDDWSQSSDFRPAYAKEPSPLQGTVIRGDGRSHRNHVYSRE 1209
>U23453-3|AAC46757.6| 297|Caenorhabditis elegans Hypothetical
protein B0252.3a protein.
Length = 297
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 300 RDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEY 398
R+ WK+K+ + + T WIVDT G++ Y
Sbjct: 92 REMWKHKMFIVYVLVMTYIWIVDTFIYFGLAFY 124
>U23453-2|AAV58891.1| 464|Caenorhabditis elegans Hypothetical
protein B0252.3c protein.
Length = 464
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 300 RDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEY 398
R+ WK+K+ + + T WIVDT G++ Y
Sbjct: 259 REMWKHKMFIVYVLVMTYIWIVDTFIYFGLAFY 291
>U23453-1|AAP86622.1| 484|Caenorhabditis elegans Hypothetical
protein B0252.3b protein.
Length = 484
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 300 RDDWKYKVVVDWTEDDTVSWIVDTAQSIGISEY 398
R+ WK+K+ + + T WIVDT G++ Y
Sbjct: 279 REMWKHKMFIVYVLVMTYIWIVDTFIYFGLAFY 311
>U23169-5|AAC46698.2| 316|Caenorhabditis elegans Hypothetical
protein C29H12.6 protein.
Length = 316
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 249 ENAANVYHTLVSCREYH 299
+N AN+YH L+S YH
Sbjct: 182 DNTANIYHELMSASSYH 198
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,392
Number of Sequences: 27780
Number of extensions: 324020
Number of successful extensions: 864
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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