Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0968
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 204 YYSNPSYDAYE 236
           YY  PSYDA E
Sbjct: 409 YYLKPSYDAQE 419


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 98  AEHVRHLLHPDDLSAHPPRRLPSLQERKRF 187
           AE+ R+     +     P R+P LQE   F
Sbjct: 257 AEYRRNFKKMQEEKIFEPHRIPQLQEVSEF 286


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 135 SAPTRLDDFQVFRRGNASHIYGNYYSNPSYDAYEEPEIE 251
           S+P    D  +++  +  H +   Y    Y  YE P+ E
Sbjct: 59  SSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENPDEE 97


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   WIPRAAGIRHEGETS 46
           W+P+   +RH+G+ S
Sbjct: 132 WVPQKYRLRHKGDGS 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   WIPRAAGIRHEGETS 46
           W+P+   +RH+G+ S
Sbjct: 132 WVPQKYRLRHKGDGS 146


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,695
Number of Sequences: 438
Number of extensions: 3708
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)