Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0966
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    26   4.0  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   4.0  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   4.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   5.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   7.0  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 236 FLNDADSSKFNVKTFSKTF*T*PSIIN 156
           F+ND  ++K+++ TFS    T  S+IN
Sbjct: 260 FINDVSTTKYDLLTFSGAIHTVSSLIN 286


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 157  LMIEGYVQKVFENVLTLNLDESASFKKFVKNTQDF 261
            L +  +V+KV E VL    +E+    +F+KN  DF
Sbjct: 1200 LGVSTFVEKV-EEVLGYKFEEARDHPQFIKNHDDF 1233


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 192 LKNFLNITFDHQLLLIEEHNRFFIAIKFHITNQHFDRASKHYHTSLTNMDS 40
           L NFL+ + +  LL    H+ +  +   H   QHF+   K+ + S T  ++
Sbjct: 311 LSNFLSHSKEPPLLSTAHHSAYRPSKNIHSMFQHFNSMKKNKNNSPTQSEN 361


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 376 KAFVPIYLQNFNITCDF*NQYNVITEIDKMNKKILEPKQSLGY 248
           K F+P       + C F    NV+   D +N+KI+    SL Y
Sbjct: 121 KEFLPEEWLLSRLDCKFLENINVVPNGDFLNRKIVRTNTSLLY 163


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -1

Query: 606 NDSPRNPKSTTLLS--KLLACPY*GSFIGLLYVRITINNQLVHFFNFSLVQGTYIYNLTY 433
           NDSPRNP S T     K L   + GS+      +  I   L+ FF +SL+   +  +L +
Sbjct: 256 NDSPRNPVSRTNAEGFKALNASFDGSY------KFPIPIVLLCFFLYSLLTPFFDIHLQF 309

Query: 432 Q 430
           Q
Sbjct: 310 Q 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,670
Number of Sequences: 5004
Number of extensions: 43172
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)