Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0966
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0544 - 9362615-9362674,9362783-9362857,9362934-9363144,936...    29   3.1  
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683...    28   5.4  

>03_02_0544 -
           9362615-9362674,9362783-9362857,9362934-9363144,
           9363279-9363403,9363492-9363593,9363676-9363738,
           9363817-9363897,9364248-9364359,9364454-9364626,
           9364722-9364829,9364909-9364992,9365131-9365193,
           9365652-9365738
          Length = 447

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 516 VRITINNQLVHFFNFSLVQGTYIYNLTYQCHNLP 415
           VR+ I+  +  + NF  V G+++YN   + H +P
Sbjct: 87  VRVLIHTSVTKYLNFKAVDGSFVYN-NGKIHKVP 119


>04_01_0519 +
           6831912-6831978,6832333-6832488,6832748-6833098,
           6833481-6833662,6833756-6834004,6834182-6834406,
           6837492-6837791,6838642-6839215,6839959-6840059
          Length = 734

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 135 NRFFIAIKFHITNQHFDRASKHYHTSLTNMDSC 37
           N FF+   +HI  Q + R + H+H   T   SC
Sbjct: 431 NGFFMKKCWHIIAQDYYRLASHFHAGCTIWKSC 463


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,223,716
Number of Sequences: 37544
Number of extensions: 214109
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)