Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0964
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 64 1e-10
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 56 4e-08
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 49 4e-06
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 48 7e-06
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 44 2e-04
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 30 2.1
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 29 3.7
04_03_0515 + 16698589-16701066 29 3.7
03_01_0110 - 865605-866004,866094-866712,867659-867863 29 4.9
11_08_0026 + 27752519-27755441,27755538-27755923 28 8.5
06_01_1076 - 8778210-8778734 28 8.5
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 8.5
01_06_0663 - 30991390-30992340 28 8.5
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 63.7 bits (148), Expect = 1e-10
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 3/171 (1%)
Frame = +2
Query: 134 ITDAIEDIKYQLHTLENDGLL-RGELKAS-EQFQCIKGSTDLETAVKGAIFVQECVPENL 307
++ A++ I L L G L + + S EQ +C+ +L + A V E + E+
Sbjct: 46 LSRAVDSISSSLRRLVAKGQLSQASCEHSIEQIKCVSSVQEL----RDADLVIEAIVESE 101
Query: 308 DLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIV 487
D+KKK+F LD + + I QVI H NPP + L+EI+
Sbjct: 102 DIKKKLFVELDKITKPSAILASNTSSISITRLASATNRPCQVIGMHFFNPPPIMKLIEII 161
Query: 488 PAPWTKPEVAKKTXEIMEEIGQQPVSLTREIDGFVLNRIQYAILDEV-WRL 637
T EV K E +G + V +++ GF++NRI +++E W L
Sbjct: 162 RGADTSEEVFTKVKSFSERLG-KTVICSQDYPGFIVNRILMPMINEAFWAL 211
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 55.6 bits (128), Expect = 4e-08
Identities = 38/159 (23%), Positives = 72/159 (45%)
Frame = +2
Query: 128 KQITDAIEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPENL 307
K + I+ IK L + G + E + + + G D E K V E V EN+
Sbjct: 348 KFLNAGIDRIKANLQSRVRKGKMTEE-RYEKAMSLVTGVLDYER-FKDVDLVIEAVIENV 405
Query: 308 DLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIV 487
LK+++F +L+ + + E + K +++ +H +P + +PL+EIV
Sbjct: 406 KLKQQIFSDLEKYCPSHCVLATNTSTIDLNLIGEKTRSKDRIVGAHFFSPAHVMPLLEIV 465
Query: 488 PAPWTKPEVAKKTXEIMEEIGQQPVSLTREIDGFVLNRI 604
T P+V ++ ++I + P+ + GF +NR+
Sbjct: 466 RTQHTSPQVVVDLLDVGKKIKKTPI-VVGNCTGFAVNRM 503
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 48.8 bits (111), Expect = 4e-06
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
Frame = +2
Query: 125 SKQITDA-IEDIKYQLHTLENDGLLRGELKASEQFQCIKGSTDLETAVKGAIFVQECVPE 301
++Q DA I +K L +L G + E + + G D E + A V E V E
Sbjct: 343 NEQFLDAGISRVKANLQSLVKRGQMTKE-DYENKLSLLSGVLDYEQ-FREADVVIEAVIE 400
Query: 302 NLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVE 481
+L LK+K+F +L+ N I + + ++ +H +P + +PL+E
Sbjct: 401 DLSLKQKIFADLEKYCHSNCILATNTSTIDLHLIGQKTSCQDRIAGAHFFSPAHAMPLLE 460
Query: 482 IVPAPWTKPEVAKKTXEIMEEIGQQPVSLTREIDGFVLNRI 604
I+ T +V + ++I + P+ + GF +NR+
Sbjct: 461 IIRTHRTSSQVVIDLLNVAKQIRKTPI-VVGNCTGFAVNRM 500
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 48.0 bits (109), Expect = 7e-06
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Frame = +2
Query: 185 DGLL-RGEL---KASEQFQCIKGSTDLETAVKGAIFVQECVPENLDLKKKVFQNLDSVVD 352
+GL+ RG L K ++ +KG+ D K V E V E + LK+ +F +L+ V
Sbjct: 357 EGLVKRGSLTKDKMNKAMSLLKGALDYSD-FKDVDMVIEAVIEKIPLKQSIFSDLEKVCP 415
Query: 353 DNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTXE 532
+ I E + ++I +H +P + +PL+EIV T P+
Sbjct: 416 PHCILATNTSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLIT 475
Query: 533 IMEEIGQQPVSLTREIDGFVLNR 601
+ + I + PV + GF +NR
Sbjct: 476 VGKMIKKVPV-VVGNCTGFAVNR 497
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/104 (24%), Positives = 51/104 (49%)
Frame = +2
Query: 293 VPENLDLKKKVFQNLDSVVDDNTIXXXXXXXXXXXXXXEGLKHKSQVIVSHPVNPPYYVP 472
V EN+ +K++VF +L+ + + E + ++ +H +P + +P
Sbjct: 416 VVENVKVKQQVFADLERYCPSHCVLATNTSTIDLDLIGEKTNSQDRIAGAHFFSPAHVMP 475
Query: 473 LVEIVPAPWTKPEVAKKTXEIMEEIGQQPVSLTREIDGFVLNRI 604
L+EIV + T P+V ++ ++I + PV + GF +NR+
Sbjct: 476 LLEIVRSNHTSPQVVVDLLDVGKKIKKTPV-VVGNCTGFAVNRM 518
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 84 VCL-SWLSGYC-I*CSQNRLPMPLRTSNTNCIPLKTMVCYEASSK 212
+C+ W+SG CS RLP LR NC + C+ SSK
Sbjct: 720 ICIHKWVSGVDQSMCSGCRLPFNLRRKRHNCYNCALVFCHACSSK 764
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 407 EGLKHKSQVIVSHPVNPPYYVPLVEIVPAPWTKPEVAKKTXEIMEEIGQ 553
E L H V+ + PV+ +VE+ P TK +A+K M+E GQ
Sbjct: 745 EMLDHLESVLANEPVSVKSGQFIVEVKPQGVTKGLIAEKVLTSMKEKGQ 793
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 383 YLLNLIISCYRQLRCRDSGTPFF 315
Y N++I+CYR+ R D G P F
Sbjct: 190 YTYNILINCYRRARRPDLGLPVF 212
>03_01_0110 - 865605-866004,866094-866712,867659-867863
Length = 407
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 446 PVNPPYYVPL---VEIVPAPWTKPE 511
PV PP Y+ L ++VP PW +PE
Sbjct: 317 PVKPPTYLRLNSKAQLVPNPWRQPE 341
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 142 IGNLF*LHHIQ*PDNQLRQTTSPMISRLNHFQR 44
+GNL L ++ DNQL P +SRLN +
Sbjct: 564 MGNLSKLEYLVLSDNQLSSNVPPSLSRLNSLMK 596
>06_01_1076 - 8778210-8778734
Length = 174
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 446 PVNPPYYVPL---VEIVPAPWTKPE 511
PV PP Y+ L ++VP PW +PE
Sbjct: 115 PVKPPTYLRLNSKPQLVPNPWRQPE 139
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 34 KIGIVGSGLIGRSWAMLFASVGYQ-VTVYDVVKT 132
+IGIVG+G G S A A +GY+ VT+++ T
Sbjct: 23 RIGIVGAGPSGLSAAYALAKLGYRNVTLFEKCHT 56
>01_06_0663 - 30991390-30992340
Length = 316
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 34 KIGIVGSGLIGRSWAMLFASVGYQVTVYD 120
++ VG+G++G+S A + GY +TVY+
Sbjct: 21 RVAWVGTGVMGQSMAGHLLAAGYALTVYN 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,553,357
Number of Sequences: 37544
Number of extensions: 373106
Number of successful extensions: 1038
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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