Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0963
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   5.9  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    25   5.9  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   5.9  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   7.8  

>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 472 TGQRERQQ*VASNILMKYLKNIGCYDYC 555
           +GQ E +   +S IL+K+++   C+ YC
Sbjct: 71  SGQAEGKGGDSSKILIKWIRTTPCFSYC 98


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 115 DVTQFIEVLVFLLLNRTYQV*SRLDHAGCMQ 207
           DV  F E+ V  +  R Y V + LDH+ CMQ
Sbjct: 73  DVPYFQELSVNAI--RVYAVNASLDHSACMQ 101


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 214 GGTPRVRLLHCTAEWLGVDPCD 279
           GG     LLH  +  LG+ PCD
Sbjct: 8   GGGSHPELLHLISNRLGITPCD 29


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 105 AMMRCYTVYRGSRISLAKSYVP 170
           + +RCYT + G+ IS   +Y+P
Sbjct: 131 SFVRCYTRFLGNLISAQSNYLP 152


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 267 NPQPLRSAMEQPHPG-GTPMILHTACMIKAALHLVRTI*QEKYENL-YKLCNISSSRFRN 94
           NP PLR+    PH G   P+ +    ++   + +  ++  + Y  + +KL  IS +   N
Sbjct: 237 NPDPLRTTQVFPHSGPSIPLNIAATQVVSQKMSVPSSLLDQLYHAMPHKLMEISQNTNAN 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,599
Number of Sequences: 5004
Number of extensions: 49180
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)