Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0963
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689     29   2.6  
01_01_0387 + 2999222-2999495,2999834-2999934                           29   3.4  
06_03_1081 - 27447128-27447550                                         28   6.0  
01_03_0038 + 11862743-11862884,11863145-11863704,11863733-118637...    27   8.0  

>03_05_0202 + 21948955-21949057,21950191-21950285,21950414-21950689
          Length = 157

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 394 NATMD*KETERELMRGTRTHVRGIPVTGQRE 486
           NA  +  ET RELM G RTH +G+P +  R+
Sbjct: 112 NAQENKVETLRELM-GARTHSKGVPKSSPRD 141


>01_01_0387 + 2999222-2999495,2999834-2999934
          Length = 124

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -2

Query: 313 HGRSETYKNKTNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTY 161
           HG    Y+      G PP     +GA  P    + P +  +   G  PG Y
Sbjct: 33  HGGGHGYEQGYGGHGYPPHAGAAHGAYPPQHGAYPPQHGAYPGHGYVPGAY 83


>06_03_1081 - 27447128-27447550
          Length = 140

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 340 NICMCVQVTHGRSETYKNKTNRKGQPPTTPQCNGAASPWGYPHDPA 203
           ++ +CV    G  E Y  +T+  GQP        AA  +GY H  A
Sbjct: 57  HVPVCVGEEGGPVERYAVRTDLLGQPAFAALLRRAAQEYGYGHPGA 102


>01_03_0038 +
           11862743-11862884,11863145-11863704,11863733-11863777,
           11864174-11864563
          Length = 378

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 434 CVELERMCVVYLLQGSASVSNE 499
           C+E E  C VYL QG A + +E
Sbjct: 291 CLEFEEGCYVYLYQGLAHIVHE 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,313
Number of Sequences: 37544
Number of extensions: 343604
Number of successful extensions: 929
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)