Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0963
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    28   5.4  
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    28   5.4  
Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 283 TNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTYDLARE 146
           T +   P   P    +A+P   P  P  + H   GS PGT  +A+E
Sbjct: 360 TPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQE 405


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 283 TNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTYDLARE 146
           T +   P   P    +A+P   P  P  + H   GS PGT  +A+E
Sbjct: 310 TPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQE 355


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 283 TNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTYDLARE 146
           T +   P   P    +A+P   P  P  + H   GS PGT  +A+E
Sbjct: 360 TPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQE 405


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 283 TNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTYDLARE 146
           T +   P   P    +A+P   P  P  + H   GS PGT  +A+E
Sbjct: 360 TPKSAVPSEAPPTPRSAAPSDVPPTPKSNGHIANGSIPGTPSVAQE 405


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSIALRSGWGLTLAISLIFISFTSTVCD 319
           C   LRS W   L IS + +S  S +CD
Sbjct: 85  CLDILRSQWSPALTISKVLLSICSLLCD 112


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 236 CSIALRSGWGLTLAISLIFISFTSTVCD 319
           C   LRS W   L IS + +S  S +CD
Sbjct: 85  CLDILRSQWSPALTISKVLLSICSLLCD 112


>Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = -2

Query: 322 QVTHGRSETYKNKTNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTP 170
           QV H       N   R       P  N  +S   YP+DP +   DQ    P
Sbjct: 57  QVAHQNPRYQGNVPGRGSNFSMNPAANPMSSQHQYPYDPNFYPTDQSSHVP 107


>Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/51 (29%), Positives = 18/51 (35%)
 Frame = -2

Query: 322 QVTHGRSETYKNKTNRKGQPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTP 170
           QV H       N   R       P  N  +S   YP+DP +   DQ    P
Sbjct: 57  QVAHQNPRYQGNVPGRGSNFSMNPAANPMSSQHQYPYDPNFYPTDQSSHVP 107


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 268 QPPTTPQCNGAASPWGYPHDPAYSLHDQGGSTPGTYDLARE 146
           +P   PQ +G  SP   P DP+      G S+PG  D + E
Sbjct: 165 EPSEDPQPSGPPSPG--PVDPSEDPQPSGSSSPGPVDPSDE 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,685
Number of Sequences: 27780
Number of extensions: 294898
Number of successful extensions: 768
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)