Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0963
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.7  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.5  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = -2

Query: 283 TNRKGQPPTTPQCNGA---ASPWGYPHDPAYSLH 191
           TNR G P  TP  N A   A   G     AY +H
Sbjct: 101 TNRGGSPKLTPYPNWAQNKAGACGSAITTAYRIH 134


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -1

Query: 134 SINCVTSHHRDSGIVEFTCSDISFV 60
           ++ C+  HHRD+ +V  +  +++ +
Sbjct: 532 AVACLLFHHRDTPVVRASGRELTII 556


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -1

Query: 134 SINCVTSHHRDSGIVEFTCSDISFV 60
           ++ C+  HHRD+ +V  +  +++ +
Sbjct: 622 AVACLLFHHRDTPVVRASGRELTII 646


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 247 CNGAASPWGY 218
           C+G A+P+GY
Sbjct: 20  CDGCAAPYGY 29


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 556 NSSHNILYFLNTSLKY 509
           N   N+LYF+N + KY
Sbjct: 76  NDVLNVLYFINKNDKY 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,715
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)