Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0962
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   126   4e-30
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.12 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    29   0.86 
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   4.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   6.0  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.0  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   8.0  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  126 bits (303), Expect = 4e-30
 Identities = 69/150 (46%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
 Frame = +2

Query: 89  RAIAFLSTET-IRGNITFTQV-QDGKVHVQGGHHWCCLRXEYGFHVHEKGDLSGGCVSTG 262
           RA+A L  ++ + G +TF QV Q+ +V V           + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 263 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 442
            HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 443 KADDYGKSDHPDSRKTGNAGGRVACGVIGI 532
             DD GK    +S KTGNAG R ACGVIGI
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 302  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 421
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 500 GGRVACGVIGIL*IYKFLIELSYLIKY 580
           GG++ C +IG++ I  F+  +SYL  Y
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFY 223


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -1

Query: 265 RSSRYTTAA*VALLMDVEAVFXPEAAPVM 179
           RSSR   AA +A ++D +    PEAAPVM
Sbjct: 6   RSSRL--AAKIANVLDSKGTIIPEAAPVM 32


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 317 HVGDLGNVVFDENHYSRIDLVDDQI 391
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 531 IPMTPQATRPPALPVFLESG 472
           +P  P   +PPA+PV  E+G
Sbjct: 673 VPEVPSVPQPPAVPVVPEAG 692


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +3

Query: 6   GRNKMLXNSHSWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSL 143
           GR   +  S +WL++       ++PR+P P   +  ++    S+ L
Sbjct: 187 GRGSQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRKARYASNGL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,859
Number of Sequences: 5004
Number of extensions: 59525
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)