Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0962
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 155 3e-38
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 155 4e-38
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 143 1e-34
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 114 7e-26
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 36 0.031
12_02_0251 + 16436846-16438237 31 1.2
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 3.6
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 29 4.8
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 29 4.8
01_07_0037 + 40657449-40658010,40658567-40658901 28 6.3
10_01_0204 + 2199778-2200835,2201212-2201311 28 8.3
09_06_0081 + 20745627-20748144,20748211-20748308 28 8.3
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 28 8.3
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 28 8.3
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 155 bits (376), Expect = 3e-38
Identities = 75/149 (50%), Positives = 96/149 (64%), Gaps = 1/149 (0%)
Frame = +2
Query: 89 RAIAFL-STETIRGNITFTQVQDGKVHVQGGHHWCCLRXEYGFHVHEKGDLSGGCVSTGS 265
+A+A L S+E ++G I F+Q DG V G +GFHVH GD + GC+STG
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGL-KPGLHGFHVHALGDTTNGCMSTGP 61
Query: 266 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 445
HFNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHAD 121
Query: 446 ADDYGKSDHPDSRKTGNAGGRVACGVIGI 532
DD GK H S+ TGNAGGRVACG+IG+
Sbjct: 122 PDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 155 bits (375), Expect = 4e-38
Identities = 76/152 (50%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Frame = +2
Query: 80 TPSRAIAFL-STETIRGNITFTQVQDGKVHVQGGHHWCCLRXEYGFHVHEKGDLSGGCVS 256
T +A+ L S+E ++G I F Q DG V G +GFH+H GD + GC+S
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGL-KPGLHGFHIHALGDTTNGCMS 176
Query: 257 TGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVL 436
TG H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+
Sbjct: 177 TGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVV 236
Query: 437 HEKADDYGKSDHPDSRKTGNAGGRVACGVIGI 532
H DD GK H S+ TGNAGGRVACG+IG+
Sbjct: 237 HADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 143 bits (346), Expect = 1e-34
Identities = 70/149 (46%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Frame = +2
Query: 89 RAIAFLS-TETIRGNITFTQVQDGKVHVQGGHHWCCLRXEYGFHVHEKGDLSGGCVSTGS 265
+A+A L T + G +T TQ G V +GFH+HE GD + GC+STG
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNV-RVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 266 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 445
HFNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
Query: 446 ADDYGKSDHPDSRKTGNAGGRVACGVIGI 532
DD GK H S TGNAGGR+ACGV+G+
Sbjct: 172 EDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 114 bits (274), Expect = 7e-26
Identities = 49/86 (56%), Positives = 64/86 (74%)
Frame = +2
Query: 206 YGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDD 385
+GFH+H GD + GC STG HFNP +K HG P+D RHVGDLGN+V +++ + I + D
Sbjct: 52 HGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDL 111
Query: 386 QISLSGPHGIIGRAVVLHEKADDYGK 463
QISLSGPH I+GRAVV+H +DD G+
Sbjct: 112 QISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +2
Query: 203 EYGFHVHEKGDLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVD 382
++G+ ++E GDL+ G STG +NP D+ N+ +GDLG + E ++
Sbjct: 203 KHGWSINEFGDLTRGAESTGKVYNP--SDYRS----NKPLGDLGTLEAGEKGEAQFSASK 256
Query: 383 DQISLSGPHGIIGRAVVLHEKAD 451
+++ + +IGR++ L+ D
Sbjct: 257 EKLKVV---DLIGRSIALYATED 276
>12_02_0251 + 16436846-16438237
Length = 463
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 9 RNKMLXNSHSWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSL 143
RN L N+ ++ L R + PRRP+P P Y R A H++
Sbjct: 52 RNLRLRNADGFVPGLLRGFFL-QPRRPSPDPDYQPLRFVAAGHAI 95
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 113 LWIERQWRGTAW*SHDEPSP 54
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 522 TPQATRPPALPVFLESGWSLLP*SSAFSWSTTALP 418
T A +P A+P + W+ P +A W T A P
Sbjct: 249 TDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAP 283
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 515 KRLD-RQRCRSSWSPDGHSCRNHQLSRGAPPPC 420
KR+D RQRC+ S+SP H + A P C
Sbjct: 453 KRMDDRQRCQCSFSPVARPSCGHDELQAAAPSC 485
>01_07_0037 + 40657449-40658010,40658567-40658901
Length = 298
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 521 HRKRLDRQRCRSSWSPDGHSCRNHQLSRGAPPPCR 417
HR R Q R W+ CR H + RG P CR
Sbjct: 41 HRGRRSPQPVRLKWAAVSTYCRRHGVERG-PMQCR 74
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 337 RGL*REPLQQDRPGRRPDLAIGSARYHRQGGGAPR 441
RG REP+ + A+G+AR R GGGA R
Sbjct: 36 RGSQREPVGGAGRKEKAKSAVGAARAERWGGGAER 70
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 519 PQATRPPALPVFLESGWSLLP*SSAFSWSTTALPMIPCGP 400
P+A+ PA PV GW++ P ++ +S+S + P
Sbjct: 591 PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAP 630
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 113 LWIERQWRGTAW*SHDEPSP 54
LW +W T+W S D+PSP
Sbjct: 172 LWTGAEWDLTSWRSPDDPSP 191
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/66 (27%), Positives = 26/66 (39%)
Frame = +2
Query: 233 DLSGGCVSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHG 412
DL GG +G P+H+ N N VG N V +N+ + S S G
Sbjct: 357 DLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSASHDFG 416
Query: 413 IIGRAV 430
+ R +
Sbjct: 417 GMTRII 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,498
Number of Sequences: 37544
Number of extensions: 467367
Number of successful extensions: 1369
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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