Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0961
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    28   0.93 
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.7  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 79   FTMNVEWHHSSGQVHL*MSLKRIRQKNSLNQTV 177
            F ++ E HH  G VH  ++L     K +LN+++
Sbjct: 982  FIVDYESHHGEGNVHFNVTLTEAGMKEALNESL 1014


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 266 VLVEASIFAFCYSTTDGVVRPSPTSHSTQCASTD 367
           VL++    A C++T D  + P PT  S  C   D
Sbjct: 157 VLIDCFATAACFTTEDTSINPIPTLPSVFCTIVD 190


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +1

Query: 238 STMFQSIPHSTSRSFDIRFLLFDNRWRCPPQPNVSLDPVCFDGRHDPKHQLY 393
           S    S P+ST+ S  +  L  D    C P+P + L P     R     +LY
Sbjct: 179 SVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLY 230


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 264 MWNALEHCGHIQDDL 220
           +W+AL HC  +QDDL
Sbjct: 404 IWSALGHCYLMQDDL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,264
Number of Sequences: 5004
Number of extensions: 39022
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)