Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0961
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    31   0.73 
09_04_0372 + 17026551-17026778,17027469-17027830,17027925-170279...    27   8.9  
04_01_0213 - 2692253-2694562                                           27   8.9  

>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 305 SNSKKRISKLLLVLCGMLWNIVDTFKTTFS 216
           S+S K I  L+L  CG+ W +V+  K +FS
Sbjct: 202 SSSVKNIRVLVLNYCGVTWELVEKIKVSFS 231


>09_04_0372 +
           17026551-17026778,17027469-17027830,17027925-17027968,
           17028079-17028293,17028405-17028529,17028617-17028692
          Length = 349

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 111 ARVVPLDIHCKCS*KLIEAKYAPTTEALSVIFK 13
           A V PLD+  KC+ ++   KY  TT A  V+ +
Sbjct: 63  AAVTPLDV-IKCNIQIDPTKYKSTTSAFGVVMR 94


>04_01_0213 - 2692253-2694562
          Length = 769

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 238 STMFQSIPHSTSRSFDIRFLLFDNRWRCPPQPNVSLDPVCFDGRHDP 378
           ST   S  H   RS+    LL   +WR   +  VSLDP  F  +  P
Sbjct: 334 STWTYSFLHDRPRSWLHHSLLCSGKWRMIRRSIVSLDPSRFFSKDHP 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,082,793
Number of Sequences: 37544
Number of extensions: 231521
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)