Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0961
         (614 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118647-1|AAM50016.1| 1226|Drosophila melanogaster SD05267p pro...    32   0.71 
AE014296-2615|AAF49551.3| 1226|Drosophila melanogaster CG5841-PA...    32   0.71 
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA...    31   1.6  
AJ012588-1|CAA10070.1|  480|Drosophila melanogaster Notchless pr...    29   6.6  
AY089286-1|AAL90024.1|  488|Drosophila melanogaster AT08344p pro...    28   8.7  
AE014134-128|AAF51479.2|  488|Drosophila melanogaster CG2863-PA ...    28   8.7  

>AY118647-1|AAM50016.1| 1226|Drosophila melanogaster SD05267p
           protein.
          Length = 1226

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 298 LFDNRWRCPPQPNVSLDPVCFDG-RHDPKHQLYRV 399
           +F  RW+C    N  L  +C+ G +H  +H+ YR+
Sbjct: 187 IFGIRWKCAECINYDLCSICYHGDKHHLRHRFYRI 221


>AE014296-2615|AAF49551.3| 1226|Drosophila melanogaster CG5841-PA
           protein.
          Length = 1226

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 298 LFDNRWRCPPQPNVSLDPVCFDG-RHDPKHQLYRV 399
           +F  RW+C    N  L  +C+ G +H  +H+ YR+
Sbjct: 187 IFGIRWKCAECINYDLCSICYHGDKHHLRHRFYRI 221


>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
            protein.
          Length = 2284

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 316  RCPPQPNVSLDPVCFDGRHDPK 381
            RCP +P  +L P CF G  DP+
Sbjct: 1832 RCPQKPPTTLAPKCFPGSSDPE 1853



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 316  RCPPQPNVSLDPVCFDGRHDPK 381
            RCP +P  +L P C+ G  DP+
Sbjct: 1500 RCPQKPPTTLQPKCYPGSSDPE 1521



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 316  RCPPQPNVSLDPVCFDGRHDPKHQ 387
            RCP  P  ++ P C+ G  DP  Q
Sbjct: 1755 RCPQTPQTTIRPKCYPGSTDPDCQ 1778


>AJ012588-1|CAA10070.1|  480|Drosophila melanogaster Notchless
           protein protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 356 HTGSSETLGWGGQRHLLSNSKKRISKLLLVLCGMLWNIVDTFKTTFSGSGQWFPNFS 186
           HT +   + WGG   + ++SK R  K+     G+L         TFSG   W  N +
Sbjct: 242 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCR-------TFSGQAHWVNNIA 291


>AY089286-1|AAL90024.1|  488|Drosophila melanogaster AT08344p
           protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 356 HTGSSETLGWGGQRHLLSNSKKRISKLLLVLCGMLWNIVDTFKTTFSGSGQWFPNFS 186
           HT +   + WGG   + ++SK R  K+     G+L         TFSG   W  N +
Sbjct: 250 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCR-------TFSGHAHWVNNIA 299


>AE014134-128|AAF51479.2|  488|Drosophila melanogaster CG2863-PA
           protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 356 HTGSSETLGWGGQRHLLSNSKKRISKLLLVLCGMLWNIVDTFKTTFSGSGQWFPNFS 186
           HT +   + WGG   + ++SK R  K+     G+L         TFSG   W  N +
Sbjct: 250 HTNAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCR-------TFSGHAHWVNNIA 299


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,563,062
Number of Sequences: 53049
Number of extensions: 405543
Number of successful extensions: 1141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)