Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0961
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PQCSRAFHIVLVEASIFAFCYSTTDGVVRPSPT 337
           P CS A   +  E +   + +   +G +R SP+
Sbjct: 198 PLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PQCSRAFHIVLVEASIFAFCYSTTDGVVRPSPT 337
           P CS A   +  E +   + +   +G +R SP+
Sbjct: 198 PLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PQCSRAFHIVLVEASIFAFCYSTTDGVVRPSPT 337
           P CS A   +  E +   + +   +G +R SP+
Sbjct: 249 PLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 239 PQCSRAFHIVLVEASIFAFCYSTTDGVVRPSPT 337
           P CS A   +  E +   + +   +G +R SP+
Sbjct: 198 PLCSFAIESISYEQTAITYVWKNDEGTLRKSPS 230


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 479 NRNTMLNTFLINVILNTFYF 420
           N    LN F+ ++ LNT+YF
Sbjct: 215 NLENKLNYFIEDIGLNTYYF 234


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 217 LKVVLNVSTMFQSIPHST 270
           L +VL+ +  F+S PH T
Sbjct: 126 LTLVLSCAMKFESYPHDT 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,677
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)