Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0960
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    84   2e-17
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    30   0.35 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    29   0.62 
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    29   0.62 
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   5.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.6  

>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
 Frame = +3

Query: 60  YKLTSTAMLWLQTNKES-----SGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDME 224
           Y+LTST +L+L +  E      S  +NL G LTRQ  Q    +D    IAN+G++VE+ME
Sbjct: 162 YRLTSTIILFLSSGSEEQSALPSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEME 221

Query: 225 NKIRNTLNDIYFGKTKDIVSGLRSVIPADVAR 320
            ++RN L D+YFGKTKDI++  RS+ P   A+
Sbjct: 222 TRMRNFLQDVYFGKTKDIINQTRSIQPVSDAQ 253


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1004

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +3

Query: 144  RQAEQDSTVSDVTPHIANIGRMVEDMENKI----------RNTLNDIYFGKTKD-IVSGL 290
            RQ +Q    + +  H+A  G M+  +EN +           N + D   G  KD I+SGL
Sbjct: 940  RQQQQKGFFAQINDHLAQRGNMLGGIENTMDDLEEMSAEWANEIKDSLAGTKKDLILSGL 999

Query: 291  RSVIP 305
            +S IP
Sbjct: 1000 KSYIP 1004


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 293 PQPAHYIFCFTKINVVKCVSDLIFHVFHHAPNICNVRSHITY 168
           P  +   +   K++ +  V+D+ F  FH  P++CN++  I Y
Sbjct: 46  PNNSEEQYVILKLDKLALVTDITFGKFH-TPHLCNLKDFIVY 86


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 512 VHKFSHVRFVSLFILL--QHFYLRYITERLHLM 420
           V  F+++ F+SLF+L+  Q  YLR   +R HL+
Sbjct: 183 VKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 257 INVVKCVSDLIFHVFHHAPNICNVRSHITYCRVLFCLSSQTASKVHRAAAFF 102
           IN    V D +F    +    C+     ++   L C     + ++HRA +FF
Sbjct: 545 INANAAVEDRLFDFGRYESRYCDNGCIDSFVLFLQCYQDLDSKQIHRAISFF 596


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +3

Query: 96  TNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMENKIRNTLNDIYFGKTKD 275
           T   SS    L    +R ++ +   SD + H+    RM  ++   I+N LND     T++
Sbjct: 240 TYLNSSEDSTLSPLPSRSSDTNDPQSD-SQHVLRQERMRIELRQYIKNILNDDELHLTEE 298

Query: 276 IVSGL 290
           ++S L
Sbjct: 299 VLSFL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,066
Number of Sequences: 5004
Number of extensions: 42688
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)