Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0960
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U35240-1|AAB38521.1|  276|Drosophila melanogaster capping protei...   156   3e-38
AY069829-1|AAL39974.1|  276|Drosophila melanogaster SD07714p pro...   156   3e-38
AE014134-280|AAF51349.1|  276|Drosophila melanogaster CG17158-PA...   156   3e-38
AL035311-2|CAA22949.1| 1854|Drosophila melanogaster EG:52C10.5 p...    29   7.7  
AE013599-2562|AAS64818.1| 1809|Drosophila melanogaster CG6355-PB...    29   7.7  
AE013599-2561|AAF57789.1| 1809|Drosophila melanogaster CG6355-PA...    29   7.7  

>U35240-1|AAB38521.1|  276|Drosophila melanogaster capping protein
           beta protein.
          Length = 276

 Score =  156 bits (378), Expect = 3e-38
 Identities = 71/87 (81%), Positives = 81/87 (93%)
 Frame = +3

Query: 36  RRSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVE 215
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+ +PHIANIG+MVE
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVE 218

Query: 216 DMENKIRNTLNDIYFGKTKDIVSGLRS 296
           +MENKIRNTLN+IYFGKTKDIV+GLRS
Sbjct: 219 EMENKIRNTLNEIYFGKTKDIVNGLRS 245


>AY069829-1|AAL39974.1|  276|Drosophila melanogaster SD07714p
           protein.
          Length = 276

 Score =  156 bits (378), Expect = 3e-38
 Identities = 71/87 (81%), Positives = 81/87 (93%)
 Frame = +3

Query: 36  RRSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVE 215
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+ +PHIANIG+MVE
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVE 218

Query: 216 DMENKIRNTLNDIYFGKTKDIVSGLRS 296
           +MENKIRNTLN+IYFGKTKDIV+GLRS
Sbjct: 219 EMENKIRNTLNEIYFGKTKDIVNGLRS 245


>AE014134-280|AAF51349.1|  276|Drosophila melanogaster CG17158-PA
           protein.
          Length = 276

 Score =  156 bits (378), Expect = 3e-38
 Identities = 71/87 (81%), Positives = 81/87 (93%)
 Frame = +3

Query: 36  RRSGRNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVE 215
           + +GR AHYKLTSTAMLWLQTNK+ SGTMNLGGSLTRQ EQD+ VS+ +PHIANIG+MVE
Sbjct: 159 KTTGRTAHYKLTSTAMLWLQTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVE 218

Query: 216 DMENKIRNTLNDIYFGKTKDIVSGLRS 296
           +MENKIRNTLN+IYFGKTKDIV+GLRS
Sbjct: 219 EMENKIRNTLNEIYFGKTKDIVNGLRS 245


>AL035311-2|CAA22949.1| 1854|Drosophila melanogaster EG:52C10.5
           protein.
          Length = 1854

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 51  NAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMENK 230
           N+  + TST+      + E+S  +      T +A Q  TVS+V  HI+NI  +     N 
Sbjct: 153 NSETRGTSTSSNTAAEDSETSDRVETLPLPTSEANQGRTVSNVLKHISNI--VATKNNND 210

Query: 231 IRN 239
           +RN
Sbjct: 211 LRN 213


>AE013599-2562|AAS64818.1| 1809|Drosophila melanogaster CG6355-PB,
           isoform B protein.
          Length = 1809

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 51  NAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMENK 230
           N+  + TST+      + E+S  +      T +A Q  TVS+V  HI+NI  +     N 
Sbjct: 113 NSETRGTSTSSNTAAEDSETSDRVETLPLPTSEANQGRTVSNVLKHISNI--VATKNNND 170

Query: 231 IRN 239
           +RN
Sbjct: 171 LRN 173


>AE013599-2561|AAF57789.1| 1809|Drosophila melanogaster CG6355-PA,
           isoform A protein.
          Length = 1809

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 51  NAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMENK 230
           N+  + TST+      + E+S  +      T +A Q  TVS+V  HI+NI  +     N 
Sbjct: 113 NSETRGTSTSSNTAAEDSETSDRVETLPLPTSEANQGRTVSNVLKHISNI--VATKNNND 170

Query: 231 IRN 239
           +RN
Sbjct: 171 LRN 173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,942,343
Number of Sequences: 53049
Number of extensions: 485154
Number of successful extensions: 1110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)