Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0960
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...   128   5e-30
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...   128   5e-30
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...   128   5e-30
Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical ...    29   2.3  
U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to tran...    27   9.3  
U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to tran...    27   9.3  

>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score =  128 bits (308), Expect = 5e-30
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +3

Query: 48  RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMEN 227
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D   H+AN+GRM+ED E+
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQES 221

Query: 228 KIRNTLNDIYFGKTKDIVSGLRS 296
           K+R T+N+IYFGKTK ++S LRS
Sbjct: 222 KMRLTINEIYFGKTKKVMSDLRS 244


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  128 bits (308), Expect = 5e-30
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +3

Query: 48  RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMEN 227
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D   H+AN+GRM+ED E+
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQES 221

Query: 228 KIRNTLNDIYFGKTKDIVSGLRS 296
           K+R T+N+IYFGKTK ++S LRS
Sbjct: 222 KMRLTINEIYFGKTKKVMSDLRS 244


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score =  128 bits (308), Expect = 5e-30
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = +3

Query: 48  RNAHYKLTSTAMLWLQTNKESSGTMNLGGSLTRQAEQDSTVSDVTPHIANIGRMVEDMEN 227
           R AHYKLTST MLWLQTNK SSG MNLGGSLTRQ E D+ ++D   H+AN+GRM+ED E+
Sbjct: 162 RQAHYKLTSTIMLWLQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQES 221

Query: 228 KIRNTLNDIYFGKTKDIVSGLRS 296
           K+R T+N+IYFGKTK ++S LRS
Sbjct: 222 KMRLTINEIYFGKTKKVMSDLRS 244


>Z92829-5|CAB07345.1|  324|Caenorhabditis elegans Hypothetical
           protein F10A3.5 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 244 SVFLILFSMSSTMRPIFAMCGVTSLTVESCSACLVK 137
           ++ +ILFS+     PI AMC +    V   S C+ K
Sbjct: 286 NLIMILFSIYPCFEPIVAMCCIKCFRVRITSKCICK 321


>AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical
           protein K02F6.7 protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 542 RHIYRGN*FNVHKFSHVRFVSLFILLQHFYLRYI 441
           RHI+R N  + H+F  ++ V +++   HFYL ++
Sbjct: 236 RHIFRNNTISPHRFQDLQ-VLVYLEEDHFYLAHV 268


>U13642-8|AAG00040.1|  428|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform a
           protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 513 CS*VLTREVRFTVYPLATLLSSLHHRTSPPHV 418
           C  +L+  V  T+YPL+T    +  +T+PPH+
Sbjct: 229 CCLLLSVAVFSTMYPLSTYTGMILLQTTPPHL 260


>U13642-7|AAZ32791.1|  446|Caenorhabditis elegans Similar to
           transporter of divalentcations protein 1, isoform b
           protein.
          Length = 446

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 513 CS*VLTREVRFTVYPLATLLSSLHHRTSPPHV 418
           C  +L+  V  T+YPL+T    +  +T+PPH+
Sbjct: 247 CCLLLSVAVFSTMYPLSTYTGMILLQTTPPHL 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,357,845
Number of Sequences: 27780
Number of extensions: 251236
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)