Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0955
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    28   1.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   4.4  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   5.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   7.7  

>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -2

Query: 436 AKFYPPLHLRRK*KYF*IIE 377
           + FYPPLH++R+ K F I++
Sbjct: 4   SSFYPPLHVQRRRKLFKILQ 23


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 453 YSTRTKSRAEDSK*YFLKFFFCILPLFCKRSFIDLR 560
           +ST +  RA+ +K + +  F  +  L C R F++L+
Sbjct: 834 FSTISSPRAKAAKMWLISSFCAMKTLICLRGFLNLK 869


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 204 WSCLHQDLMMISWRYSEKSIIVKAYLEIIWVFQY 103
           W+C     ++ S  +S    +V AYL  IW+  +
Sbjct: 215 WNCFIPYSILFSMNWSAMFQVVGAYLSQIWIITF 248


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 492 IYYLLPATSSAWNSY 448
           I+YL+P TS  W +Y
Sbjct: 315 IFYLIPGTSKNWEAY 329


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 150 IFLNISKISSSDLDVNKT 203
           + LNIS +SS+DL++ KT
Sbjct: 775 LHLNISSVSSTDLEIWKT 792


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 378 NVKELFKVPKSRFLTDFKSGSYQFDHNFLSMYVHRFLENA*TDSDNSFFFVRK 220
           N+ E  K  +S  L+  +   Y+  ++ ++  + R L+   T+SDNSF  + K
Sbjct: 536 NLTEHLKTVES-ILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNSFAILTK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,658
Number of Sequences: 5004
Number of extensions: 48500
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)