Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0955
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706     28   6.0  
04_03_0303 + 14108902-14109208,14109259-14109286,14110120-141105...    28   6.0  

>07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706
          Length = 168

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 167 QDIIIRS*CKQDHSGSQPFRTKKKELSES 253
           QD++I+  CK +HS  +P     K++SE+
Sbjct: 72  QDVLIKVLCKVNHSDLRPLLLVSKQVSEA 100


>04_03_0303 +
           14108902-14109208,14109259-14109286,14110120-14110505,
           14111071-14111604,14112362-14112445,14112933-14113516
          Length = 640

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 18  CSKKKHFL*RC-FYKDNINPCPN 83
           CS  +HFL RC +YKDN +  P+
Sbjct: 275 CSANQHFLLRCTYYKDNKSTNPD 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,558,850
Number of Sequences: 37544
Number of extensions: 229805
Number of successful extensions: 402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)