Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0955
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical pr...    29   3.1  

>Z92812-9|CAM84813.1|  338|Caenorhabditis elegans Hypothetical
           protein T03E6.9 protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 546 MIFCRTKAIYKRKTSKNIIYYLLPATSSAWNSYFGITLNFTHLFIYVESENI 391
           M+ C    I   +  K  + Y       AW S  G+T  FT L +  ES NI
Sbjct: 186 MVLCDDMFIADHRHWKIYVPYFCSLIFGAWCSITGVTSVFTCLLMIYESRNI 237


>Z81463-6|CAD89721.1|  351|Caenorhabditis elegans Hypothetical
           protein C06B8.9 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 332 TSKVEVINSTIIFYLCMFTDFSRM 261
           T+K  VI+  IIF++ +F DFSR+
Sbjct: 146 TTKATVISVLIIFWVVVFLDFSRL 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,223,243
Number of Sequences: 27780
Number of extensions: 250855
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)