Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0954
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656...    29   3.6  
08_02_1456 + 27239651-27239656,27239738-27239986                       29   4.8  
03_02_0875 + 12038365-12039329,12039417-12039593,12039651-120398...    29   4.8  
05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    28   8.4  

>08_02_1382 +
           26565137-26565210,26565330-26565468,26565489-26565603,
           26565761-26565828,26565907-26566551,26566927-26567031,
           26567115-26567465
          Length = 498

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 132 NSVYDNPSMPRRKILLSVGSMNYRPPLERS 221
           N +YD   + R ++ L  GS+++R P ERS
Sbjct: 119 NKLYDGQVIDRIELSLGAGSLSFRAPPERS 148


>08_02_1456 + 27239651-27239656,27239738-27239986
          Length = 84

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 630 RHGQRRWICFFWMRDCQYRC 689
           + G+ RWI   W ++CQ RC
Sbjct: 44  QRGRERWIHHRWAQECQIRC 63


>03_02_0875 +
           12038365-12039329,12039417-12039593,12039651-12039893,
           12040045-12040124,12040242-12040508,12040599-12040710,
           12040757-12041071,12041357-12041366
          Length = 722

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 2   TSGSPGCRIRHEDHRRTAGQVEASIG*VQKGKNLKAKRKAES 127
           TSG PG     E    + GQ+ AS G   +GK +    KA+S
Sbjct: 561 TSGQPGATTIVESPPSSTGQLMASCGSPSEGKVVNGGNKADS 602


>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 644 SLSVTRKFTRQFAFCHVCCCCIDYFVCLYYCFKFIIFMTSSHIFITLF 501
           +L+V + FTR     HV   C+ Y  C      +++   S H+ I++F
Sbjct: 102 TLAVDKNFTRGRRTTHVAAACL-YIACRQSKKAYLLIDFSDHLQISVF 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,323,076
Number of Sequences: 37544
Number of extensions: 311917
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)