Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0953
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 29 0.54
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 27 1.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 1.7
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 3.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 3.8
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 3.8
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 26 5.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 6.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 6.7
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 8.8
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.8
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 181 RRDPGDVPEGVVPRSFDLLLFSNGTDAATPAARI 282
+ PG VP G +PR +++L ++ D A P I
Sbjct: 384 QESPGTVPSGRLPRHREVILLADLVDVAKPGEEI 417
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 190 PGDVPEGVVPRSFDLLLFSNGTDAATPAARI 282
P P G +PRS D+LL + D P R+
Sbjct: 210 PERAPPGQLPRSIDILLDDDLVDTVKPGDRV 240
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 188 TPATSPKVLSPGPLTYYYSAMGPTLPPPPLVY 283
TPA +P V P S++ P++PP PL +
Sbjct: 733 TPAPTPAVKHHPPPPPVRSSISPSMPPAPLTH 764
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +1
Query: 67 RFPLCPAEASPVHDLREETTVHRGVPVFRRRHEHGANGRRDPGDVP 204
RFP ++ S + + G+P E G NG DP + P
Sbjct: 325 RFPYYTSDQSQIMGALSFVLIWDGIPSIFYGQEQGFNGGEDPANRP 370
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 52 GQRGQRFPLCPAEASPVHDLREETTVHRGVP-VFRRRHEHGANG 180
GQ+G CP A P +D + G+P F + E A G
Sbjct: 189 GQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPAEG 232
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = -2
Query: 380 LLQPVTLPASWFADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSG 201
L +P++ P++ D + G S G S N+ A +++VP + + + + P
Sbjct: 455 LTEPISSPSTSSIDVDKEGTSFPGLPYHSSKGNLYAPQPSSNVPTKFTGGASESSSVPPR 514
Query: 200 TSPGSRRPLAPCS 162
P + + AP S
Sbjct: 515 PIPSAMKGKAPAS 527
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 191 GSRRPLAPCSCRRLNTGTPRCTVVSS 114
GS +P+ C+RL+TG P T S+
Sbjct: 61 GSTQPILNQLCKRLSTGNPNNTNAST 86
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 188 TPATSPKVLSPGPLTYYYSAMGPTLPPPPL 277
TP P + P P A P+ PPPPL
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 302 GVSGSPNIRAAGVAASVP 249
G+ SPN+RA +A VP
Sbjct: 363 GIPASPNVRATQIATQVP 380
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 374 QPVTLPASWFADGVEGGNSEQGRLGVSGSPN 282
QPV + S FADG G + VS +PN
Sbjct: 51 QPVVIITSGFADGHRAGMTASSFTPVSLTPN 81
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +1
Query: 88 EASPVHDLREETTVHRGVPVFRRRHEHGANGRRDPGDVPEGVVP 219
EA P LR T V R H G DP + ++P
Sbjct: 391 EADPYEALRINT--RSSVQFLRENHVENVQGDNDPSSLQTNIIP 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,160
Number of Sequences: 5004
Number of extensions: 49420
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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