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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0953
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151...    33   0.14 
08_02_0763 + 20924057-20924848                                         32   0.32 
06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646           32   0.42 
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    31   0.56 
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     31   0.56 
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344...    30   1.3  
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173...    30   1.3  
06_03_0178 + 17594062-17595576                                         29   2.3  
04_04_1637 - 34957626-34957883,34958271-34958420,34958522-349586...    29   3.0  
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058...    29   3.0  
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583...    29   3.0  
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    29   3.9  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    29   3.9  
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425...    29   3.9  
03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689           29   3.9  
01_06_0046 + 25943183-25943590                                         29   3.9  
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768...    29   3.9  
11_06_0437 - 23533218-23536382                                         28   5.2  
06_03_1310 + 29238644-29240260                                         28   5.2  
03_06_0263 - 32735092-32735985                                         28   5.2  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    28   5.2  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    28   6.9  
02_04_0328 + 22076321-22077835                                         28   6.9  
08_02_1310 - 26037025-26038074                                         27   9.1  
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    27   9.1  
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658...    27   9.1  
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493...    27   9.1  
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197...    27   9.1  
03_06_0244 + 32613914-32614666                                         27   9.1  
03_03_0188 + 15269347-15270213                                         27   9.1  
01_01_1063 - 8386813-8387236,8387322-8387779                           27   9.1  
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           27   9.1  

>01_01_0179 +
           1517379-1517721,1518092-1518376,1519462-1519699,
           1519796-1519946,1520049-1520446,1520552-1520573
          Length = 478

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 345 CGWCGGW***AGETGGVG*PQYTSGGGGSVGPIA 244
           CGWCG W   +G  GG    +   GGGG  G  A
Sbjct: 5   CGWCGRWRRSSGGRGGGADREANGGGGGGGGGAA 38


>08_02_0763 + 20924057-20924848
          Length = 263

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 26/65 (40%), Positives = 30/65 (46%)
 Frame = -2

Query: 413 YRQAEESE*VILLQPVTLPASWFADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSN 234
           +RQ EE+   +L QPVT  A+  A  VEGG    G  G  GSP   AA      P     
Sbjct: 32  HRQDEETLEAVLRQPVTTTAA-AAAAVEGGGGGGGG-GAGGSP-AAAAAATRRRPFRTDR 88

Query: 233 KSKDR 219
            SK R
Sbjct: 89  HSKIR 93


>06_01_1070 + 8750260-8750335,8750432-8751311,8753719-8754646
          Length = 627

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -2

Query: 368 VTLPASWFADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPG 189
           V +P +    G++ G S   R+GV  + ++ A  VA  V       +   GTT +GTSP 
Sbjct: 431 VLVPLARRVTGLDRGISYLHRMGVGFAISVAATLVAGFVERHRRESAAAAGTTDAGTSPL 490

Query: 188 SRRPLAP 168
           S   L P
Sbjct: 491 SAYWLVP 497


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -2

Query: 275 AAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTVVSSRRSCTG 96
           AA  AA      S  ++ R  TPS  SPG  R  AP S  R++  T   +  SS  S + 
Sbjct: 64  AAAEAAGSQARRSQSTERRPATPSRLSPGGSRAAAPSS--RISAPTSPSSAPSSPSSSSS 121

Query: 95  DAS 87
            +S
Sbjct: 122 SSS 124


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
 Frame = -2

Query: 329 GGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRL 150
           GG +       +    +R   VAAS+ +L+       G   +G   G +R LAP +    
Sbjct: 101 GGGAGAASSTAASQFTLREREVAASLLMLSGAHPARSG---AGKGKGKKRLLAPAAAAAP 157

Query: 149 NTGTPRCT----VVSSRRSCTGDASAGHRGKRWP 60
           +     C      V  R   TG A  GH+   WP
Sbjct: 158 HHSPATCADHKCAVCHRGFATGQALGGHKRCHWP 191


>12_02_1211 -
           27033927-27034029,27034130-27034273,27034358-27034439,
           27034536-27034690,27034865-27034945,27035397-27035458,
           27035966-27036034,27036807-27036867,27037560-27037816
          Length = 337

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -2

Query: 305 LGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCT 126
           L +  SP   A   ++S+P  +S+ S    TT +  S   R  + P S RR+    P   
Sbjct: 7   LPLRASPPEVAKAFSSSIPASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRI----PPLR 62

Query: 125 VVSSRRSCTGDAS 87
             SS  S  G AS
Sbjct: 63  CASSSSSSQGSAS 75


>03_01_0219 +
           1731267-1731728,1732148-1732235,1732330-1732417,
           1732528-1732573,1732687-1732785,1734363-1734431,
           1735706-1736036,1736123-1736256,1736400-1737251
          Length = 722

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 350 WFADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPG 189
           W  DG    NS+  R+ +   P+I++ GV AS  +  +++S  +    S    G
Sbjct: 485 WVVDGEPPENSQWPRVPMLSDPSIQSTGVPASNVISKNDESNQKSGLTSNEDSG 538


>06_03_0178 + 17594062-17595576
          Length = 504

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 335 VEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPGSR 183
           V GG++       +    +R A   +S  +  S ++  RGTTPS T+P +R
Sbjct: 432 VRGGSASPRTFSPAAQKFVRNAIAKSSRTIDESLRASYRGTTPSATTPKTR 482


>04_04_1637 -
           34957626-34957883,34958271-34958420,34958522-34958686,
           34958819-34958889,34959265-34959691
          Length = 356

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 182 GVTPATSPKVLSPGPLTYYYSAMGPTLPPPPLVY 283
           G++P    + + PGPL      M    PPPPL++
Sbjct: 2   GMSPTAILQSIGPGPLAGMQFQMDAAPPPPPLMH 35


>04_04_1393 -
           33204699-33204806,33204927-33205164,33205581-33205825,
           33206229-33206339,33206645-33206743,33207684-33207731,
           33207882-33207999,33208085-33208115,33208700-33208806,
           33209644-33209725,33210010-33210104,33210579-33210664,
           33211074-33211195,33211613-33211824,33212362-33212510,
           33212755-33212982
          Length = 692

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 127 PLFLPEGHVPVMLLLGT---EESAGLAVHLNECLAAGMTW 17
           PLF  EG  P +LLLGT   E SAGL  +L    AA ++W
Sbjct: 115 PLFDGEG-TPQVLLLGTSGVEISAGLHWYLKHYCAAHVSW 153


>03_02_1035 -
           13557425-13557721,13557855-13558058,13558143-13558332,
           13558450-13558841,13558931-13559023,13559297-13559500,
           13559572-13559635,13559760-13559806,13559825-13559971,
           13560243-13560335,13560420-13560599,13560993-13561128,
           13561216-13561466,13561556-13561669,13561794-13561991,
           13562050-13562110,13562921-13563210
          Length = 986

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 347 FADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPL 246
           FAD  E G SE    GV G+    +AG +++VP+
Sbjct: 687 FADTAETGYSESPSQGVDGASPSSSAGTSSNVPV 720


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 22  SSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGVPVFRRRHEHG 171
           S +   IHS+G+ G+   +     S  + L  ET    G+    + HE+G
Sbjct: 12  SKKMEPIHSNGEAGEDKTIIIEPESDANKLEVETDARHGICEAHKAHEYG 61


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 191 PATSPKVLSPGPLTYYYSAMGPTLPPPPL 277
           PAT+P  L+P P         PTLPPPP+
Sbjct: 39  PATTPTPLTPNPNP------SPTLPPPPM 61


>05_04_0288 +
           19839597-19839821,19841882-19842107,19842494-19842582,
           19845184-19845387,19845463-19845717,19845796-19846011,
           19846611-19846766,19846880-19847039,19847702-19847788,
           19847789-19847940,19848006-19848143,19848714-19848788,
           19849166-19849444
          Length = 753

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 218 GTTPSGTSPGS-RRPLAPCSCRRLNTGTPRCTVVSSRRSCTGDASAG 81
           GT PS   P S R+PL   S   + +GTP     +SRR CT  A  G
Sbjct: 679 GTKPSPARPPSARKPLGQSSNANIISGTP-----TSRRVCTPMARKG 720


>03_01_0466 - 3605909-3606073,3606689-3607004,3607184-3607689
          Length = 328

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 335 VEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSG-TSPGSRRPLAP 168
           V GG +      V G     AAG+  +VP ++S     R +  +  T PGS  PLAP
Sbjct: 132 VPGGGASAAGTVVPGD-GASAAGIRTTVPGIDSLGEVGRRSPKNAITRPGSTMPLAP 187


>01_06_0046 + 25943183-25943590
          Length = 135

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
 Frame = +2

Query: 191 PATSPKVLSPGPLTYYYSAMGPT------LPPPPLVY 283
           P+  P  L P P  YYYS   P        PPPP  Y
Sbjct: 48  PSPPPPALPPPPPYYYYSPPPPAYYPGSYCPPPPAAY 84


>01_01_0975 -
           7686297-7686458,7687117-7687245,7687754-7687831,
           7688011-7688469,7690648-7690788,7691771-7692421
          Length = 539

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
 Frame = +2

Query: 176 TGGVTPATSPKVLSPGPLTYYYSAMGPTLPP---PPLVYWGYPTXXXXXXXXXXXXXXXQ 346
           T  V P   P +  P P         P  PP   PPL  WG+PT                
Sbjct: 313 TAAVAPWVMPTIGFPPPHAAAMVPPPPHPPPFCRPPLHVWGHPTAGVEPTTAAAPPPPSP 372

Query: 347 TMMPEVLPV 373
              P +LPV
Sbjct: 373 HAQPPLLPV 381


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 263 AASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPC 165
           A + P+ N  ++ D    P G +P  R  L PC
Sbjct: 893 ATAEPVANEGEANDASAKPKGEAPVGRLQLLPC 925


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 299 VSGSPNIR--AAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAP 168
           + G+P  R  A   AA+    + +K++ + T P+   PG R PLAP
Sbjct: 335 IPGAPAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRRPGGRTPLAP 380


>03_06_0263 - 32735092-32735985
          Length = 297

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +2

Query: 95  HRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGPTL 262
           HR         +   F C  DD + V+T   +    P++++   L   YS M  TL
Sbjct: 213 HRVPRLASSLSFAGRFYCVSDDADAVMTVKTSENQPPRLVAAAELAIQYSPMMDTL 268


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 143 QCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGPTLPPPPL 277
           + +G  +N  ++G  +P   P+ L+ G     YSA+   LPPP +
Sbjct: 471 EAAGAALNQSISGSSSPVAGPQGLTKGGAKPPYSAL-RLLPPPSI 514


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 115 PEGHVPVMLLLGTEESAGLAVHLNECLAAGMTWALK 8
           PEG+VP+ ++ G  +   L VH N  LAA +  + K
Sbjct: 150 PEGYVPITVIAGFNKIKAL-VHNNSMLAAALRTSSK 184


>02_04_0328 + 22076321-22077835
          Length = 504

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 55  QRGQRFPLCPAEASPVHDLREETTVHRGVPVFRRRHE 165
           +RG   P  P    P    + ET  H+G P +R+ H+
Sbjct: 248 ERGLAPPWWPTGEEPWWGTQGETQAHQGAPPYRKPHD 284


>08_02_1310 - 26037025-26038074
          Length = 349

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 101 YMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGP 226
           +M F  +    + F  SGD    V+ G + P+ SP+ LSP P
Sbjct: 114 WMYFASRSELEKKF-VSGDGWVTVVCGVLIPSDSPQALSPPP 154


>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 245 LNSNKSKDRGTTPSGTSPG-SRRPLAPCSCRRLN-TGTPRCTVVSSRRSCTGDASAGHRG 72
           +  N+   R     GT P  S  P++ CS + +   G+P    +SS RS +G A+     
Sbjct: 212 ITDNEESPRLDDIYGTPPQLSSLPVSSCSNQSVQKAGSPVKVQLSSPRSSSGSATTNKAR 271

Query: 71  KRW 63
            RW
Sbjct: 272 LRW 274


>05_07_0029 -
           27163121-27163818,27163992-27164067,27164184-27165896,
           27166285-27166364,27166516-27166684
          Length = 911

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -2

Query: 341 DGVEGGNSE--QGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTS 195
           DG    NS   +   G   S  I    VAA+V LL +N  +   TTP  TS
Sbjct: 699 DGTNKRNSRCSETNFGQDSSNLIHPGEVAATVELLLTNVRRSTSTTPPRTS 749


>04_04_1106 -
           30948626-30948724,30948841-30949176,30949231-30949353,
           30949425-30949517,30949603-30949806,30949884-30950134,
           30951011-30952391,30952737-30953174
          Length = 974

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 213 NTFGDVAGVTPPVSTMFMSSPEHW 142
           N F +V   TPP S + MS PEH+
Sbjct: 533 NEFDNVQLTTPPPSDIDMSDPEHF 556


>04_01_0175 -
           1972361-1972429,1973185-1973334,1974956-1975105,
           1975370-1975417,1975717-1975793,1975897-1975999,
           1977103-1977233,1978793-1978970,1980656-1980676,
           1981233-1981290,1981381-1981444,1982261-1982431,
           1982526-1982637,1982779-1983021,1983783-1983964,
           1984785-1984920
          Length = 630

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 344 ADGVEGGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPG 189
           A GVE G       G   +P    A  +A+    +S+ + DRG   S T PG
Sbjct: 8   AKGVEEGGGGASANG-GDNPATATASASAAAAASSSSPADDRGLPRSSTMPG 58


>03_06_0244 + 32613914-32614666
          Length = 250

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 26/80 (32%), Positives = 34/80 (42%)
 Frame = -2

Query: 308 RLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRC 129
           R  V+GSP +R  G A       + ++  RG TP G   G RR  A C+      G  R 
Sbjct: 59  RESVTGSPRVRPRGRAVREARAVAARTPRRG-TPGG-GGGVRR--AACAGLGPIRGAERI 114

Query: 128 TVVSSRRSCTGDASAGHRGK 69
               S     G+A  G RG+
Sbjct: 115 RARPSSPDDGGEAKEGWRGE 134


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 203 PKVLSPGPLTYYYSAMGPTLPPPP 274
           P +L P PL Y +S   PT PPPP
Sbjct: 150 PFLLRPSPLKYTHS--HPTPPPPP 171


>01_01_1063 - 8386813-8387236,8387322-8387779
          Length = 293

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 185 VTPATSPKVLSPGPLTYYYSAMG---PTLPPPPLVYWGYP 295
           VT   + K+ +  P+  YY   G   P +PPPP+ Y  +P
Sbjct: 211 VTALQTNKLRAQHPVGGYYVGHGAPHPGMPPPPMPYGPHP 250


>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 42  SFRWTARPALSSVPSRSITGT*PSGRNNGT 131
           S RW  R A   +PS ++TGT P    N T
Sbjct: 63  SHRWPTRVAALDLPSSNLTGTLPPAVGNLT 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,425,658
Number of Sequences: 37544
Number of extensions: 463696
Number of successful extensions: 1936
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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