Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0953
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 74 1e-13
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 74 1e-13
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 74 1e-13
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.22
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.22
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.22
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 30 1.5
AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical ... 30 1.5
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 27 8.2
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 8.2
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 8.2
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 8.2
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 8.2
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 8.2
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/93 (41%), Positives = 53/93 (56%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPAT 199
GHPSGEAFIQM +E +A CA H+ +M+ GKK+RYIEVFQ S +++N+ G
Sbjct: 429 GHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQV 488
Query: 200 SPKVLSPGPLTYYYSAMGPTLPPPPLVYWGYPT 298
P P PL + + P P P + YP+
Sbjct: 489 PP----PAPLG-FMGQLPPQAPQPQQFWSSYPS 516
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 196
G +GE +Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 219 GRRNGEVLVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 175
G P+G+AF+Q ++E A KH + + QRYIE+F+ + ++ V+
Sbjct: 318 GRPTGDAFVQFETEEDA-QQGLLKHRQVI----GQRYIELFKSTAAEVQQVV 364
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/93 (41%), Positives = 53/93 (56%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPAT 199
GHPSGEAFIQM +E +A CA H+ +M+ GKK+RYIEVFQ S +++N+ G
Sbjct: 429 GHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQV 488
Query: 200 SPKVLSPGPLTYYYSAMGPTLPPPPLVYWGYPT 298
P P PL + + P P P + YP+
Sbjct: 489 PP----PAPLG-FMGQLPPQAPQPQQFWSSYPS 516
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 196
G +GE +Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 219 GRRNGEVLVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 175
G P+G+AF+Q ++E A KH + + QRYIE+F+ + ++ V+
Sbjct: 318 GRPTGDAFVQFETEEDA-QQGLLKHRQVI----GQRYIELFKSTAAEVQQVV 364
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/93 (41%), Positives = 53/93 (56%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPAT 199
GHPSGEAFIQM +E +A CA H+ +M+ GKK+RYIEVFQ S +++N+ G
Sbjct: 429 GHPSGEAFIQMINEQAASACAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQV 488
Query: 200 SPKVLSPGPLTYYYSAMGPTLPPPPLVYWGYPT 298
P P PL + + P P P + YP+
Sbjct: 489 PP----PAPLG-FMGQLPPQAPQPQQFWSSYPS 516
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 196
G +GE +Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 219 GRRNGEVLVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 20 GHPSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 175
G P+G+AF+Q ++E A KH + + QRYIE+F+ + ++ V+
Sbjct: 318 GRPTGDAFVQFETEEDA-QQGLLKHRQVI----GQRYIELFKSTAAEVQQVV 364
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 329 GGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 156
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 127 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 186
Query: 155 RLNTGTPRCTVVSSRRSCTGDASAG 81
+ TP + SS T S G
Sbjct: 187 TYGSSTPSASSSSSGTMSTNSGSTG 211
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 329 GGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 156
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 334 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 393
Query: 155 RLNTGTPRCTVVSSRRSCTGDASAG 81
+ TP + SS T S G
Sbjct: 394 TYGSSTPSASSSSSGTMSTNSGSTG 418
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -2
Query: 329 GGNSEQGRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 156
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 334 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 393
Query: 155 RLNTGTPRCTVVSSRRSCTGDASAG 81
+ TP + SS T S G
Sbjct: 394 TYGSSTPSASSSSSGTMSTNSGSTG 418
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 26 PSGEAFIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGG 184
PSGEAF++ ++ +A A ++R+M RY+EVF S + N GG
Sbjct: 199 PSGEAFVRFTTQDAAEK-AMDYNNRHMG----SRYVEVFMSSMVEFNRAKGGG 246
>AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical
protein Y65B4BL.2 protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -2
Query: 242 NSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTVVSSRRSCTG 96
NS+++ TTP+G+S GSR + + + + R SSRR+ +G
Sbjct: 561 NSSRATSARTTPAGSSIGSRSSIQSRASAATSVSSNRFVGPSSRRTPSG 609
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 373 WRRITYSDSSACLYRMAHLHG 435
WR I+YS SS C +R+ +G
Sbjct: 438 WRNISYSGSSDCYWRIVSANG 458
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 284 NIRAAGVAASVPL-LNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTV 123
N+ V A P NK+ R P+G + +R+PL R+N GTP T+
Sbjct: 342 NVVKPTVPAPAPADAQQNKAASRPAVPAGGAARNRQPL------RVNPGTPSTTI 390
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 284 NIRAAGVAASVPL-LNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTV 123
N+ V A P NK+ R P+G + +R+PL R+N GTP T+
Sbjct: 342 NVVKPTVPAPAPADAQQNKAASRPAVPAGGAARNRQPL------RVNPGTPSTTI 390
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = -2
Query: 311 GRLGVSGSPNIRAAGVAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPR 132
G VSGS +G S P + S S G+T +G S S A S + T
Sbjct: 990 GESTVSGSTESTVSGSTESTPTVPSTVSGSTGSTVTGESTVS-GSTASTSSGSTGSSTEA 1048
Query: 131 CTVVSSRRSCTGDASAG 81
+ VS + T +S G
Sbjct: 1049 GSTVSGSSASTVTSSTG 1065
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 284 NIRAAGVAASVPL-LNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTV 123
N+ V A P NK+ R P+G + +R+PL R+N GTP T+
Sbjct: 342 NVVKPTVPAPAPADAQQNKAASRPAVPAGGAARNRQPL------RVNPGTPSTTI 390
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 284 NIRAAGVAASVPL-LNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTV 123
N+ V A P NK+ R P+G + +R+PL R+N GTP T+
Sbjct: 342 NVVKPTVPAPAPADAQQNKAASRPAVPAGGAARNRQPL------RVNPGTPSTTI 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,652
Number of Sequences: 27780
Number of extensions: 315676
Number of successful extensions: 1250
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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