Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0953
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   2.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   2.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 354 CRKCYRLEEDHLFRFLRLPVPNGPSSWS 437
           C+KC  +++ +L +       N P  W+
Sbjct: 75  CKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 354 CRKCYRLEEDHLFRFLRLPVPNGPSSWS 437
           C+KC  +++ +L +       N P  W+
Sbjct: 75  CKKCTEIQKQNLDKLAEWFTTNEPEKWN 102


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 366 YRLEEDHLFRFLRLPVPNGPSSWSINTSRPSTN*YKKSLR 485
           Y +  +      +L +PN    WS   S P  + Y   LR
Sbjct: 348 YNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSSLLR 387


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 13   MPRSSQRRGIHSDGQRGQR 69
            + RSS+ R +H+ GQ+  R
Sbjct: 1420 LDRSSREREVHNGGQQEDR 1438


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 183 PPVSTMFMSSPEHWNTS 133
           PPV+TM+ S  E  N+S
Sbjct: 559 PPVATMYGSDEEIINSS 575


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,368
Number of Sequences: 438
Number of extensions: 3595
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)