Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0952
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    29   0.49 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.5  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    26   4.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   6.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.0  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 487 SLIVFTVVGELSPLLPSSTNVCTRAISTSLLETI*FLIFSKG 612
           ++++   +G    +LP  T  C   + T++ ET+ FL    G
Sbjct: 199 AIVIIDSIGRRRDILPIRTTTCVSTLITAVQETVRFLAIENG 240


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 692 VNKPLYNSVNKPVNTHVDNVN 630
           + KPL N++NK VN   DN+N
Sbjct: 469 IPKPLTNTINKFVNQSKDNLN 489


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 695 SVNKPLYNSVNKPVNTHVDNVNKQQDLLPLENIKNQIVSNNDVL---MALVQTLVELGNK 525
           S +   Y +V+   N H D   K     P  N +    S ND +   + LV++  +LG+ 
Sbjct: 200 STDDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSL 259

Query: 524 GDNSPTTVKTIK 489
             N+ +T +  K
Sbjct: 260 STNTSSTAQKNK 271


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 519 ITLIA*LHQCLYKGHKYIIVGDNLI 593
           +TLIA  HQ + +G+KY     NL+
Sbjct: 228 LTLIARAHQLVQEGYKYHFADKNLV 252


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 631 FTLSTCVFTGLFTELY 678
           FTLS C+F GLF+  +
Sbjct: 193 FTLSRCIFQGLFSTFF 208


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 605 ENIKNQIVSNNDVLMALVQTLVELGNKGDNSPTT 504
           +NI  Q+V+N +V M LV T + L  K +  P T
Sbjct: 20  QNIAKQVVNNENVFMKLVMTRM-LDGKTEVIPLT 52


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 375 FLKQQNIDICLLNETWFKDNK 313
           FLK QN D+C+ +E  +  N+
Sbjct: 669 FLKHQNFDVCVYDEGHYLKNR 689


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 339 NETWFKDNKFKIP 301
           NETWF+D +F  P
Sbjct: 264 NETWFQDGEFPFP 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,311
Number of Sequences: 5004
Number of extensions: 47962
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)