Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0952
         (703 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    47   3e-05
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    47   3e-05
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    39   0.008
AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      38   0.013
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    36   0.053

>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = -2

Query: 441 SKIRIAQYNIQSANSKKPLLIQFLKQQNIDICLLNETWFKD-NKFKIPG--XXXXXXXXX 271
           + +RI+ +N    +     L QF+ ++NID+ LL+ET   + N F IPG           
Sbjct: 2   ASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDG 61

Query: 270 XXXNGVAILIKPYLKYNIINTTFYEDIQTAAXXXXXXXXXXXXLCVYCPP 121
               G  ILI+  +K++ +N      +Q+ +              VYCPP
Sbjct: 62  KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPP 111


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = -2

Query: 441 SKIRIAQYNIQSANSKKPLLIQFLKQQNIDICLLNETWFKD-NKFKIPG--XXXXXXXXX 271
           + +RI+ +N    +     L QF+ ++NID+ LL+ET   + N F IPG           
Sbjct: 2   ASLRISLWNANGVSRHTQELTQFIYEKNIDVMLLSETHLTNKNNFHIPGYLFYGTNHPDG 61

Query: 270 XXXNGVAILIKPYLKYNIINTTFYEDIQTAAXXXXXXXXXXXXLCVYCPP 121
               G  ILI+  +K++ +N      +Q+ +              VYCPP
Sbjct: 62  KAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPP 111


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 38.7 bits (86), Expect = 0.008
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
 Frame = -2

Query: 435 IRIAQYNIQSANSKKPLLIQFLKQQNIDICLLNETWFKDN-KFKIPG--XXXXXXXXXXX 265
           +RIA +N    + +K  L QFL +++ID+ LL+ET       F+I               
Sbjct: 4   LRIATWNANGVSQRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPDGKA 63

Query: 264 XNGVAILIKPYLKYNIINTTFYEDIQ-TAAXXXXXXXXXXXXLCVYCPP 121
             G AILI+  +K++         +Q T+               VYCPP
Sbjct: 64  HGGTAILIRNRMKHHFYKEFAENHLQATSINIQLDDNTLLTLAAVYCPP 112


>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 37.9 bits (84), Expect = 0.013
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -2

Query: 435 IRIAQYNIQSANSKKPLLIQFLKQQNIDICLLNETWF-KDNKFKIP 301
           + I  +N ++  +K+  LI+FL+  +I I L+NETW    ++F IP
Sbjct: 12  LNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHSDRFNIP 57


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown
           protein.
          Length = 908

 Score = 35.9 bits (79), Expect = 0.053
 Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
 Frame = -2

Query: 435 IRIAQYNIQSANSKKPLLIQFLKQQNIDICLLNETWFKDNK----FKIPGXXXXXXXXXX 268
           +RI  +N    ++K P +  F+++  ID+ LL+ET  K  +    F              
Sbjct: 4   LRILVWNADGVSTKLPEVECFVRRHEIDVLLLSETHCKGAETPKLFGFVAYTANDPSGGN 63

Query: 267 XXNGVAILIKPYLKYNIINTTFYEDIQTAAXXXXXXXXXXXXLCVYCPPTSRHIRLNRLQ 88
              G AILIK  L +  +       +Q A               VYCPP       +  +
Sbjct: 64  AKGGAAILIKNSLAHFPLTPIATAKVQLAPAVIETALGPISFGAVYCPPRFAW-TTDEFK 122

Query: 87  SIIYNLPKPIFVSGD 43
            I+        V+GD
Sbjct: 123 DILEEFQTKFIVAGD 137


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,212,623
Number of Sequences: 53049
Number of extensions: 467791
Number of successful extensions: 1066
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)