Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0952
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    29   2.4  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    29   3.2  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   3.2  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   3.2  

>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 665 NKPVNTHV-DNVNKQQDLLPLENIK-NQIVSNNDVLMALVQTLVELGNKGDNSPTTVKTI 492
           NK  N  V   V ++ + L +   K N+IVS     M  + TLVE+ + G+  PT  K+ 
Sbjct: 23  NKKTNDEVASKVTEELNKLKIAEEKDNKIVSREKPEMMSLNTLVEMCSAGE-KPTKGKSE 81

Query: 491 KDI 483
           KDI
Sbjct: 82  KDI 84


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 584  VSNNDVLMALVQTLVELGNKGDNSPTTVKTIKDILI 477
            ++ N+     V+  VE+G K +N  T VKT+ DI +
Sbjct: 4305 IAKNEYGQTTVEIPVEIGLKTENKLTLVKTLNDIAV 4340


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 584  VSNNDVLMALVQTLVELGNKGDNSPTTVKTIKDILI 477
            ++ N+     V+  VE+G K +N  T VKT+ DI +
Sbjct: 4305 IAKNEYGQTTVEIPVEIGLKTENKLTLVKTLNDIAV 4340


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 584  VSNNDVLMALVQTLVELGNKGDNSPTTVKTIKDILI 477
            ++ N+     V+  VE+G K +N  T VKT+ DI +
Sbjct: 4305 IAKNEYGQTTVEIPVEIGLKTENKLTLVKTLNDIAV 4340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,279
Number of Sequences: 27780
Number of extensions: 259835
Number of successful extensions: 582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)