Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0951
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    27   2.3  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   2.6  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   6.9  
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.9  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +2

Query: 53  KKTLHVHFIVLQKKNTRHTFISKQVL*KSKLIAIYKSDFIHYIFKFIF*TQTGKQLGSLG 232
           K T+ ++   L+++ TRH F+S   L + KL         H   + +  TQ+ K  G +G
Sbjct: 6   KFTVKINDGSLRRQQTRHVFLSPAALNRLKLSPSQVIYLKHKGGEAVGITQSVKGNG-IG 64

Query: 233 PVHIQFESLMQLFKNFK 283
           P  I    L+  + N K
Sbjct: 65  PFEILISPLLAKWANLK 81


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 23.8 bits (49), Expect(2) = 2.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 113 ISKQVL*KSKLIAIYKSD 166
           +S QVL K+K IA+Y+ D
Sbjct: 142 VSPQVLPKNKAIALYEKD 159



 Score = 21.4 bits (43), Expect(2) = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 35  LQHRFHKKTLHVHF 76
           L H FH+K   VHF
Sbjct: 95  LSHAFHEKYPDVHF 108


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 520 FGRYGEVLATSSGFVLFSHIGALSQIL 600
           FG  G+V +TS  + +F H G++S +L
Sbjct: 9   FGNGGKVRSTSIEYPIFVHSGSISAML 35


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 362 HMGKSFFKRILR 397
           HMGKSFF +ILR
Sbjct: 836 HMGKSFFYKILR 847


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 629 FVTTVVY*LFSICESAPMWENKTKPLDVAKTS 534
           FV+T +Y + ++  +AP+W N + P+   +TS
Sbjct: 110 FVSTPLYTMDNV--TAPVWSNTSVPVSTPETS 139


>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 481 WWSFTETFFFSGLFGRYGEVLATSSGFV 564
           W +F     FS  F  YG+ L   +GFV
Sbjct: 109 WTAFFSLCLFSSSFTMYGQSLRLRNGFV 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,117
Number of Sequences: 5004
Number of extensions: 52351
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)