Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0950
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...   130   1e-31
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    31   0.19 
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.43 
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.0  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   7.1  

>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  130 bits (315), Expect = 1e-31
 Identities = 86/211 (40%), Positives = 118/211 (55%), Gaps = 38/211 (18%)
 Frame = +3

Query: 51  MKLNSHTKIVGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDD 230
           MK+N +T +   N+ILVPY+K HV  YH WMK+EELQ+LT SEPL L++EY+MQ +W  D
Sbjct: 1   MKINQNTTVDCGNLILVPYQKCHVLKYHNWMKNEELQELTCSEPLTLDEEYQMQASWSTD 60

Query: 231 EDKCTFIIL--DKD------IFNNTAFDETGAMIGDTNIFITD----------------- 335
           EDK TFI+L  + D      I ++       +MIGD N+F+T+                 
Sbjct: 61  EDKLTFIVLLNENDEAKKPSILDHVKAHSVESMIGDVNMFLTEEYADGIEEFDDSPSDAN 120

Query: 336 -----KEL---AIGEIEIMIAEPSARGKKRGWEAVKLMLLY----GI-KSIKIQTFEAKI 476
                KE     +GE+E+MIAEP  R K  G + V   L Y    GI K+ +I  +  K+
Sbjct: 121 ATNATKESEVHIVGELELMIAEPQNRRKGYGTKIVDAFLHYVESSGIAKNKQILKYRVKV 180

Query: 477 LLQNVISIKMFKKLGFQEKSVSAVFQEVTLD 569
             QN  SI++FKKLGF +   +A F  V L+
Sbjct: 181 GSQNKPSIRLFKKLGFSQVKYNAYFDHVELE 211


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 958

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +3

Query: 138  WMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDIFNNTAFDETGAMIGDT 317
            W K +   KL   E   ++  Y+M +    +   C  ++ +   F+ T ++ T     D+
Sbjct: 848  WRKGDTPSKLVILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNATVVAELDS 907

Query: 318  NIFITDKE 341
             ++I D+E
Sbjct: 908  AVWILDRE 915


>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 135 EWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIILDKDIFNN 278
           E + SE+LQ+   S+ +    E E++    +++ K +FI LDK + NN
Sbjct: 217 EAIASEKLQQEERSQIIKSLMEEELEINEQEEKIKHSFIDLDKTLLNN 264


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/55 (30%), Positives = 32/55 (58%)
 Frame = +3

Query: 465  EAKILLQNVISIKMFKKLGFQEKSVSAVFQEVTLDKKVSNEWTEWLASSLSFEIK 629
            EAK LL   I IK F K+G    +++ V + +      S+E+ ++L+ S+S+ ++
Sbjct: 1197 EAKTLLFQSIVIKSFSKVG--RLNINHVSEPID-----SDEFADYLSKSISYHLR 1244


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 222 HDDEDKCTFIILDKDIFNNTAFDETGAMIGDTN 320
           +  E K T  +L+KDI+NN+A++    ++ +T+
Sbjct: 161 YSQELKLTNELLEKDIYNNSAWNHRFYVLFETS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,580
Number of Sequences: 5004
Number of extensions: 46765
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)