Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0950
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0005 + 4873802-4874036,4874156-4874227,4874728-4874815,487... 148 3e-36
03_02_0157 + 6008840-6008908,6009795-6009932,6010921-6011014,601... 31 1.0
01_07_0102 - 41093042-41093231,41093385-41093473,41093730-410939... 30 1.8
02_04_0159 - 20416943-20416962,20417099-20417285 29 4.2
11_01_0214 - 1682731-1682744,1683597-1683640,1684284-1684372,168... 28 5.5
10_08_0002 - 13986969-13989338 28 5.5
01_06_0774 + 31885440-31885481,31885670-31885702,31885772-31885873 28 7.3
12_01_0215 - 1634141-1634144,1634467-1634510,1635639-1635668,163... 27 9.7
08_02_0684 + 20031661-20031957,20032094-20032512,20033600-200336... 27 9.7
08_02_0369 - 16324765-16326248,16326339-16326351 27 9.7
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164... 27 9.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 27 9.7
>03_02_0005 +
4873802-4874036,4874156-4874227,4874728-4874815,
4875192-4875339,4875429-4875467,4875642-4875722,
4875781-4875846
Length = 242
Score = 148 bits (359), Expect = 3e-36
Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 9/169 (5%)
Frame = +3
Query: 78 VGANIILVPYKKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDKCTFIIL 257
VG +LVPY + HVP YH WMK L + TASEPL+L+QE+++ ++W D K TFI+L
Sbjct: 26 VGERAVLVPYLREHVPRYHGWMKDPALLEATASEPLSLDQEFDVHRSWTLDPLKHTFIVL 85
Query: 258 DKDIFNN---TAFDETGAMIGDTNIFITD-KELAIGEIEIMIAEPS-----ARGKKRGWE 410
DKD+ T AM+GD NI++ D +L + EIEIMIAE +RGK G E
Sbjct: 86 DKDLIEGGFAVGDPHTEAMVGDVNIYMNDPDDLQLAEIEIMIAEHKSTFCYSRGKGLGQE 145
Query: 411 AVKLMLLYGIKSIKIQTFEAKILLQNVISIKMFKKLGFQEKSVSAVFQE 557
A+ +M+ + ++ I TF AKI N S+K+F+KLGF++ S S+VF+E
Sbjct: 146 AILIMMAFAVEKYGIHTFRAKINESNTASLKLFRKLGFKDASYSSVFKE 194
>03_02_0157 +
6008840-6008908,6009795-6009932,6010921-6011014,
6011313-6011361,6015190-6015265,6015466-6015558,
6015786-6015851
Length = 194
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +3
Query: 90 IILVPYKKHHVP-VYHEWMKSEELQKLTASEP-LNLEQEYEM-QKTWHDDEDKCT 245
++ P KKH +P Y+ +M+ EE+Q++ A++P + + + M K W + +C+
Sbjct: 98 VVKPPEKKHRLPSAYNRFMR-EEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCS 151
>01_07_0102 -
41093042-41093231,41093385-41093473,41093730-41093924,
41095173-41095334,41095412-41095484,41095691-41095758,
41095847-41095894,41096012-41096101,41096204-41096286,
41097000-41097066
Length = 354
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 351 GEIEIMIAEPSARGKKRGWEAVKLMLLYGIKSIKIQTFEAKILLQNVISIKMFKK 515
G++ IM+ S G + A+ L++ YG+ +K+ TF + + N FKK
Sbjct: 173 GDVPIMVTGHSMGGAMASFCALDLVVNYGLDGVKLMTF-GQPRIGNAAFASFFKK 226
>02_04_0159 - 20416943-20416962,20417099-20417285
Length = 68
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = -1
Query: 328 MNIFVSPIIAPVSSKAVLLNISLSKMINVHLSSSSCHVFCISYSCSKFN 182
+ ++ SP + +K+ +S++ ++ ++S H+F I+YS S FN
Sbjct: 13 LTVYASPCSSYYCNKSRAPGLSMTLLLLRMHNASGTHLFYINYSSSNFN 61
>11_01_0214 -
1682731-1682744,1683597-1683640,1684284-1684372,
1684461-1684505,1685044-1685073,1685189-1685296,
1685380-1685465,1686180-1686267,1687494-1687694,
1687885-1687960,1688040-1688089,1688180-1688242,
1688322-1688398,1688893-1688953,1689377-1689417,
1690005-1690086
Length = 384
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 156 ILRTSSIHDRQVHDVFCKEPKLYLLLRFWYDYLISLLSMQSSIYICLVP 10
I+ TS + + C P + L R W ++++ SM + ++C +P
Sbjct: 267 IINTSRVAVILSMAILCSYPPMTYLSRPWLSIVVNIASMLKNNFVCKLP 315
>10_08_0002 - 13986969-13989338
Length = 789
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 471 KILLQNVISIKMFKKLGFQEKSVSAVFQEVTLDKKVSNEWTEWL 602
K LQN I +K+ KK +K + V ++ ++KKV NE+ EWL
Sbjct: 167 KDFLQN-IPLKLLKKA--VQKQIPIV--KLYIEKKVCNEFNEWL 205
>01_06_0774 + 31885440-31885481,31885670-31885702,31885772-31885873
Length = 58
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 102 PYKKHHVPVYHEWMKSEELQKLTASEP 182
PYKK HVPV + + EL K+ + P
Sbjct: 22 PYKKEHVPVILDSIFQSELNKMHKAVP 48
>12_01_0215 -
1634141-1634144,1634467-1634510,1635639-1635668,
1635784-1635891,1635975-1636060,1636779-1636866,
1638135-1638253,1638525-1638600,1638820-1638882,
1639536-1639592,1640016-1640056,1640642-1640738,
1641636-1641692
Length = 289
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 156 ILRTSSIHDRQVHDVFCKEPKLYLLLRFWYDYLISLLSMQSSIYICLVP 10
I+ TS + + C P + L R W ++++ SM + ++C +P
Sbjct: 220 IINTSRVAVILSMALLCSYPPMTYLSRPWLSIVVNIASMLKNNFVCKLP 268
>08_02_0684 +
20031661-20031957,20032094-20032512,20033600-20033606,
20033905-20033982,20034086-20034121
Length = 278
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 335 VSYEYICIPNHCTCFIEGCIIKYILVQNDKCAFIFVIMPCFLH 207
+ Y ++ + HC I +++ + K A FV +PC +H
Sbjct: 195 IGYLWLAV-GHCCLIIPYAVLRLRRLARKKVASFFVSVPCMVH 236
>08_02_0369 - 16324765-16326248,16326339-16326351
Length = 498
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 567 PKSLLEILH*HFSPEILT 514
P +LL +LH HF+P +LT
Sbjct: 272 PANLLHLLHMHFTPTVLT 289
>08_02_0368 -
16312961-16314588,16314794-16314890,16316360-16316489,
16316605-16316657
Length = 635
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 567 PKSLLEILH*HFSPEILT 514
P +LL +LH HF+P +LT
Sbjct: 405 PANLLHLLHMHFTPTVLT 422
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 108 KKHHVPVYHEWMKSEELQKLTASEPLNLEQEYEMQKTWHDDEDK 239
+K EW + +E + E L E + + WHD+E+K
Sbjct: 502 RKQRQKFEEEWEQLDEKRTHLEEEAKKLNNEKKNLERWHDNEEK 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,539
Number of Sequences: 37544
Number of extensions: 246940
Number of successful extensions: 637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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