Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0950
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.8  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        22   5.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.7  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 141 SIHDRQVHDVFCKEPKLYLLLRFWYDYL 58
           S+H    H +   +P+ Y L++ W D++
Sbjct: 255 SLHASLNHTLTKDQPETYELVKEWRDFV 282


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 41 IDSNEIK*SYQNRRSKY 91
          +   ++K  +QNRRSKY
Sbjct: 20 LTQTQVKIWFQNRRSKY 36


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 186 NLEQEYEMQKTWHDDEDKCTFIILDKDIFNNTAFDE 293
           N E  ++  +  +++     F  +D +IFN   FD+
Sbjct: 213 NSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDK 248


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 246 FIILDKDIFNNTAFDETGAMIGDTNIFITDK 338
           F++LD  +FN    +ET   +  TN+ ++ K
Sbjct: 606 FLLLD--MFNCVVVEETIPSLNSTNVTLSTK 634


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,576
Number of Sequences: 438
Number of extensions: 3064
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)