Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0949
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    53   1e-08
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    52   3e-08
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   1.9  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    25   3.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    24   7.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   7.8  

>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 53.2 bits (122), Expect = 1e-08
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +3

Query: 177 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 353
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 354 IPGGPRGKKTKLRAIWG 404
           + G      +K+R IWG
Sbjct: 60  VRG------SKIRVIWG 70


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 177 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 353
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 354 IPGGPRGKKTKLRAIWG 404
                RG  +K+R IWG
Sbjct: 61  -----RG--SKIRVIWG 70


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 401 PDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 306
           P  T LGFF   T  N  P    VH  +M AS
Sbjct: 336 PVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 147 PTKVLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGA 278
           PT++    + P H +L  +    G +  +R Q    ALL+ E A
Sbjct: 20  PTRITSSRALPAHLKLKYRQESQGTEEEVRKQDLREALLRAEAA 63


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 241 WLRRPRLYPVNTAFAYSLPWR 179
           WL R  L+P N +   +LP+R
Sbjct: 508 WLDRTNLFPCNRSTRSTLPYR 528


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 229 PRLYPVNTAFAYSLPWRGFDALRR 158
           PR++  NT F  SL  RG+  +RR
Sbjct: 416 PRVHGFNTFFYTSLQRRGYAGVRR 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,239
Number of Sequences: 5004
Number of extensions: 28512
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)