Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0949
(405 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for ... 97 3e-20
BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a ... 97 3e-20
BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein. 97 3e-20
BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a ... 97 3e-20
BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a ... 97 3e-20
AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting ... 97 3e-20
AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a ... 84 2e-16
X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a pr... 38 0.010
AM082137-1|CAL06283.1| 101|Homo sapiens immunoglobulin heavy ch... 29 5.9
AJ579146-1|CAE45400.1| 120|Homo sapiens immunoglobulin heavy ch... 29 5.9
AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein. 29 5.9
DQ926304-1|ABK81522.1| 127|Homo sapiens immunoglobulin heavy ch... 29 7.8
>X52966-1|CAA37138.1| 110|Homo sapiens protein ( Human mRNA for
ribosomal protein L35a. ).
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>BC061890-1|AAH61890.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>BC017093-1|AAH17093.1| 110|Homo sapiens RPL35A protein protein.
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>BC010949-1|AAH10949.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>BC001037-1|AAH01037.1| 110|Homo sapiens ribosomal protein L35a
protein.
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>AY871273-1|AAX11429.1| 110|Homo sapiens cell growth-inhibiting
protein 33 protein.
Length = 110
Score = 96.7 bits (230), Expect = 3e-20
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C YVY+AK T PG
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPG- 61
Query: 366 PRGKKTKLRAIWG 404
GK K R IWG
Sbjct: 62 --GKPNKTRVIWG 72
>AL365223-3|CAI15713.1| 96|Homo sapiens ribosomal protein L35a
pseudogene 3 protein.
Length = 96
Score = 83.8 bits (198), Expect = 2e-16
Identities = 39/73 (53%), Positives = 49/73 (67%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGG 365
GRL++K+ F GYKR L+NQ E+TALLK+EG +++ FY GK C VY+AK T IPG
Sbjct: 2 GRLWSKSFFAGYKRSLQNQREHTALLKIEGGYAQDETEFYLGKRCACVYKAKSNTMIPG- 60
Query: 366 PRGKKTKLRAIWG 404
K K R IWG
Sbjct: 61 --SKPNKSRVIWG 71
>X94619-1|CAA64325.1| 21|Homo sapiens ribosomal protein L35a
protein.
Length = 21
Score = 38.3 bits (85), Expect = 0.010
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 186 GRLYAKAVFTGYKRGLRNQ 242
GRL++KA+F GYKRGLRNQ
Sbjct: 3 GRLWSKAIFAGYKRGLRNQ 21
>AM082137-1|CAL06283.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 29.1 bits (62), Expect = 5.9
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 168 ASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 314
A R GR Y TG R+ +NT L++ G + + AV+Y K
Sbjct: 53 AMSGRGGRTYYAGSVTGRFSISRDNSKNTLYLQMNGLRVEDTAVYYCAK 101
>AJ579146-1|CAE45400.1| 120|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 120
Score = 29.1 bits (62), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 234 RNQHENTALLKVEGAKDRNDAVFYAGKHCVY 326
R+ ENT L++ + + AV+Y ++C Y
Sbjct: 72 RDNSENTLYLQMNSLRAEDTAVYYCARYCTY 102
>AF043976-1|AAD23734.1| 262|Homo sapiens CLCA homolog protein.
Length = 262
Score = 29.1 bits (62), Expect = 5.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 187 AGCTQRPYSQD--ISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFP 360
A C RP+ +D + A T P S+ ++ V MQ+ L S+ CTE + P
Sbjct: 203 ASCIARPFRRDSQTGLYEAKCTFIPKRSQTAKESIVFMQN--LDSVTEFCTEKTHNKEAP 260
Query: 361 EV 366
+
Sbjct: 261 NL 262
>DQ926304-1|ABK81522.1| 127|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 127
Score = 28.7 bits (61), Expect = 7.8
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 126 APAAPVEPTKVLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFY 305
AP +E V+ + S G YA AV G R+ +NT L++ K + AV+Y
Sbjct: 40 APGKGLEWVSVIYRGS----GTHYADAV-KGRFTISRDSSKNTLYLQMNSLKVEDTAVYY 94
Query: 306 AGKH 317
G+H
Sbjct: 95 CGRH 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,265,274
Number of Sequences: 237096
Number of extensions: 1254761
Number of successful extensions: 8436
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8436
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2985693880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -