Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0949
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    93   5e-20
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    29   0.96 
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    29   0.96 
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    29   0.96 
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    29   0.96 
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    29   0.96 
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    27   3.9  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    26   9.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 93.5 bits (222), Expect = 5e-20
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = +3

Query: 150 TKVLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYV 329
           T V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK  VY+
Sbjct: 4   TAVARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYL 63

Query: 330 YRAKKRTPIPGGPRGKKTKLRAIWG 404
           Y+A  +T   G      T+ RAIWG
Sbjct: 64  YKAHNKTLKTG--HTVATRTRAIWG 86


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 237 NQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGPRGKKTK 386
           N  E     KVE AKD+        KHCV  ++A+   P+   P   K K
Sbjct: 534 NDQEPAVATKVEMAKDKEGVKTTQRKHCVIKFQAR---PLSDRPENLKAK 580


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 208 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 348
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 208 YSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 348
           +S D+ +V+A S    L+ RL    TV +Q ++  SIAS   + +RG
Sbjct: 141 HSVDVELVHAVSMFVILTQRL----TVQLQLYVSKSIASANQQAKRG 183


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 24/78 (30%), Positives = 33/78 (42%)
 Frame = +1

Query: 169 HQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRG 348
           H SP+T+  T    S   S   +TST TP +   +   T    S   +S  +  T  +  
Sbjct: 94  HSSPSTSTSTSTSTSTSTSTSRSTSTVTPTT---RSSTTTTATSTPTSSSKATTTSAQIT 150

Query: 349 HQFPEVPVAKKPSCVLSG 402
              PE+P A  P  VL G
Sbjct: 151 Q--PEIPQA-APGTVLKG 165


>U53336-7|AAA96179.1|  642|Caenorhabditis elegans Hypothetical
           protein K07C11.9 protein.
          Length = 642

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 326 IDAMLASIKDCIITVFCSFNLEESGVLVL 240
           IDAM+    D +++V  S  LE+SG+L L
Sbjct: 492 IDAMIEGNSDVLVSVQVSEMLEKSGILEL 520


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 344 LLSSVHIDAMLASIKDCIITVFCSFNLEESGVLVLVA*TTLISCEYGLCV 195
           L+ S+++  ++ SI  CI+ +F     ++   +VL      ++  YGL V
Sbjct: 10  LVLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFRYFLAAVYGLTV 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,177,224
Number of Sequences: 27780
Number of extensions: 175601
Number of successful extensions: 439
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)