Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0946
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.84 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   2.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 264 TGRRWWIIAKVRRRRSWIRYR 202
           TG   W++  ++R+R W R R
Sbjct: 30  TGDEKWVVNNIKRKRWWSRPR 50


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 85  LVSCFNNITHP*IFLSFTNYRSKLLC 8
           +VSC     HP   +  +  RS L+C
Sbjct: 361 IVSCSPQTVHPETIIDVSRRRSSLIC 386


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 255 RWWIIAKVRRRRSWIRYR 202
           +W +   ++R+RSW R R
Sbjct: 34  KWVVYNNIKRKRSWSRPR 51


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 255 RWWIIAKVRRRRSWIRYR 202
           +W +   ++R+RSW R R
Sbjct: 155 KWVVYNNIKRKRSWSRPR 172


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +1

Query: 163 MENKM-GLPPPYEQSVP 210
           +EN + GLPPPY  + P
Sbjct: 483 IENTIQGLPPPYRLNKP 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,784
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)