Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0942
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        25   4.1  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.1  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   7.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    24   9.4  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 202 IASASYSTFGNGHAFSLRVEEVSRITVAGCDESRHAAGVF 83
           I S S S FG+G AF L  E      V G  +  +  G+F
Sbjct: 92  INSESTSLFGDGLAFFLAAERAKPGPVFGFTDKFNGYGIF 131


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 37  HDIEPLRADLCRPGIETHQLRDGFHRN 117
           H   PLR  +C PG +T Q+     RN
Sbjct: 810 HPTHPLRVTVCLPGSKTIQVARRSFRN 836


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 SSQPATVILDTSSTRRENACPLP 176
           S  PATV++ T+S     +CP P
Sbjct: 169 SCNPATVLIVTTSGSTSTSCPPP 191


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 120 ATVILDTSSTRRENACPLPNVEYDAEAISTDVDLYFIKKVYL 245
           A V+ +  ST    A P PN+  +++  S  +  Y   +VY+
Sbjct: 290 AGVLFNDYSTVGWRAAPNPNILLNSDYTSVSIPGYVFSRVYM 331


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -3

Query: 192 RHIQHSATGTHF--PSELKRYP 133
           R I+H+A GTH+   S +KR P
Sbjct: 5   RKIEHTADGTHYDATSNVKRKP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,783
Number of Sequences: 5004
Number of extensions: 33924
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)