Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0942
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    28   0.041
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    28   0.041
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.88 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   0.88 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 28.3 bits (60), Expect = 0.041
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 95  CVTAFIATCHCDSGYLFNSEGKCVPVAEC 181
           C+      C C  GYL N +  CVP ++C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 28.3 bits (60), Expect = 0.041
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 95  CVTAFIATCHCDSGYLFNSEGKCVPVAEC 181
           C+      C C  GYL N +  CVP ++C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 216 DLYFIKKVYLTIIKL 260
           DL FIK +Y T+IKL
Sbjct: 351 DLPFIKDIYETVIKL 365


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 0.88
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 216 DLYFIKKVYLTIIKL 260
           DL FIK +Y T+IKL
Sbjct: 57  DLPFIKDIYETVIKL 71


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 128 DSGYLFNSEGK 160
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 128 DSGYLFNSEGK 160
           DSGY+ N++GK
Sbjct: 339 DSGYILNNDGK 349


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 445 ADM*TYYMYIKFKFLDIFFYCLLLRWV 365
           A+   +  Y  F FL+   YC+   W+
Sbjct: 140 AERCNFKAYCLFSFLNTIVYCVPAGWI 166


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 208 VEIASASYSTFGNGHAFSLRVEEVSR 131
           V  A+  Y T   G A ++ +++VSR
Sbjct: 339 VRPATVQYDTCCQGRATAIYIDKVSR 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,737
Number of Sequences: 438
Number of extensions: 2367
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)