Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0941
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    29   0.64 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   1.5  
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         26   5.9  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.9  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.9  

>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +2

Query: 116 QYISPLRNRRLDTVFADKTVV*HDIRKKINLIVICYSHINK 238
           +Y+SP    +  T+   KT++  DI+K++N + + + HIN+
Sbjct: 441 EYVSP----KSMTIDLSKTLLGDDIKKEVNALGVIFVHINR 477


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 113 FQYISPLRNRRLDTVFADKTVV*HDIRKKINLIVICYSHINKWCSFHMS 259
           F Y+  LRN+R + V A+K  +  DIR  I+  ++C  + N++   H S
Sbjct: 330 FNYLQHLRNKRDEAVHAEKRRL-LDIRGSIHDRLVC-RYENRYNKLHAS 376


>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 284 NFLIKLRSTTYAINEDSKEDCAVGNAVTTHLTLLLSMNQSHHSPLVGLDA*HLCRKN 454
           N LIK +S   A+ +D K    +G+     + + +  +   + P+VG +     R+N
Sbjct: 26  NQLIKEKSAAGALTKDDKSPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLREN 82


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -1

Query: 309 VLLNFIRKFKELLRPFPD-I*NEHHLLI*E*QITIKLIFFLI 187
           +LLNFI     LL+  PD + N  H+LI E Q T K+ +FL+
Sbjct: 214 LLLNFIL----LLQKQPDCVRNIKHILIDEFQDTSKIQYFLV 251


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 396 FIDSSNVRCVVTALPTAQSSFESSFIAYVVLLNFIRKFKE 277
           F + +    ++ ALPT       +FIA VV+LN+ R F E
Sbjct: 118 FCEQALFHNLLLALPTGLGK---TFIAAVVMLNYFRWFPE 154


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 7    VCDKLSKMCSIEVNFQNVKVELFCFFRL 90
            + +KL  +C+  +N ++VK+ L   FRL
Sbjct: 1982 ITEKLINLCNTRINSKSVKMSLKDHFRL 2009


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,011
Number of Sequences: 5004
Number of extensions: 54928
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)