Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0941
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.90 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.4  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 217 NYN*IDFFSYIMLYYRFISEDCI*SPIP 134
           NYN  ++ +Y  LYY  I+ + I  P+P
Sbjct: 340 NYNNNNYNNYKKLYYNIINIEQIPVPVP 367


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 353 GNAVTTHLTLLLSMNQSHHSPLVGLDA*HLCRKNYR 460
           G  ++T LTL     Q H  PL       LC K +R
Sbjct: 378 GKTLSTKLTLKRHKEQQHFQPLNSAVC-ALCHKVFR 412


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 300 NFIRKFKELLRPFPDI*NEHHLLI 229
           N +RKF+++L  FP      H+LI
Sbjct: 265 NVVRKFRDVLDEFP---QPKHMLI 285


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 300 NFIRKFKELLRPFPDI*NEHHLLI 229
           N +RKF+++L  FP      H+LI
Sbjct: 265 NVVRKFRDVLDEFP---QPKHMLI 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,111
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)