Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0938
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    33   0.027
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.0  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   3.1  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    27   3.1  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    26   4.1  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   4.1  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    26   5.5  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    25   7.2  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   9.5  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.5  

>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 85  VLP-NPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP 261
           V+P  PVF+ LP +YR     K  Y +  +LV    ++ +S Y + Q  L+  K  +   
Sbjct: 27  VVPIQPVFAPLPPDYR--SLYKKLYGQGAFLVDNP-VEASSPYDFSQPILKFGKLPIKQV 83

Query: 262 VMIVKEQALFEKNLKPEEYINKLQE 336
           +   + Q    KNL   +  N++QE
Sbjct: 84  LRDNESQQKDRKNLPRNQKSNEIQE 108


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
 Frame = +1

Query: 82  KVLPNPVFSELPQNYRLSE--EQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVD 255
           ++L  P FS      RL++    + F ++  +    +  +  SL S++Q  +     +  
Sbjct: 95  QLLRQPSFSSSENTDRLADLLRVRRFIYQKAW----KSYENPSLSSHRQYQIPTPIQLAS 150

Query: 256 SPVMIVKEQALFEKNLKPEEY-----INKLQEILYDDVFMTYGEHPRLLDVISQFIGDDI 420
           S  ++ K ++   K L   EY     IN +Q  L   + +   +HP+ +D +++FIG + 
Sbjct: 151 SASLLKKVESFIAKELLLFEYLDGHQINFIQIFLMGLLRVQNIQHPQTIDELAEFIGHEE 210

Query: 421 TAI 429
           ++I
Sbjct: 211 SSI 213


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 542 WTMSIRIMAVCMSFQSL 592
           W ++I +M +C+ FQSL
Sbjct: 78  WQLNIPVMGICLGFQSL 94


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 241 KGIVDSPVMIVKEQALFEKNLKPEEYINK 327
           K I    ++  K +  F KN++PEEYI K
Sbjct: 33  KRIKQDLILKAKTKKHFYKNVRPEEYIKK 61


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 262 VMIVKEQALFEKNLKPEEYINK-LQEILYDDVFMT 363
           +MI KE +LF+   K +  + K LQ + YD++  T
Sbjct: 236 IMINKESSLFDSQEKIDSQLEKFLQPLKYDEIGST 270


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 291 KKCLFFDNHNRAVNYSFAYLQKALFV 214
           KKCL  D     V+ SF Y++ A FV
Sbjct: 157 KKCLILDLDETLVHSSFKYIEPADFV 182


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 268 IVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFIN 447
           IV+E  + E  L  +E+I+ +Q+  Y +    YG  P+ + V+ + +      +   F+ 
Sbjct: 405 IVRE--IKEVELYAKEFISGIQQASYPEAAKHYGRDPKQMGVVVEKLNSQCLEMVYSFVG 462

Query: 448 K 450
           +
Sbjct: 463 E 463


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +1

Query: 277 EQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMF-INKP 453
           ++ + E+++   +Y  +     YD  ++  G   R +D+     GD I  I +   +NK 
Sbjct: 224 QELICERSITRMDYPIRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNK- 282

Query: 454 PGTARHPPHQDLFYFPIRP 510
              A HP    L Y    P
Sbjct: 283 --VAWHPTKHILAYAVSEP 299


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 653 PWYSLPASGTSPWGYKISCL*DFGMTYRQPLSLLTWSTAVHEPMILSTGLIGK*NKSW 480
           PWY++PA+GT+ +    +        Y+   SL  +++ +H P++ +  L     K W
Sbjct: 312 PWYAVPATGTNMFLIARAWKFYRNRNYQNARSLF-FASLLHLPLLFTLTLACHMIKVW 368


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 557 RIMAVCMSFQSLISKIFYTPMVMCRRPVNC 646
           RI  VC  F++  S IF TP V+    + C
Sbjct: 319 RIFWVCYIFETTTSLIFGTPPVLGDLEIEC 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,249
Number of Sequences: 5004
Number of extensions: 63157
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)