Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0938
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          27   0.21 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.9  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 478 HQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYV--IPKSHKQDILYPHGD 624
           H+ + YF + P ++ I S   ++H+ K N  +       ++++ +++ H D
Sbjct: 75  HKGIVYFELLPPNRTINSVVYIEHLTKLNNAIEEKRFELTNRKGVVFHHDD 125


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
 Frame = +1

Query: 91  PNPVFSELPQNYRLSEEQKSFYWENGYLVIKELIDFTSLYSY-KQRFLQICKGIV--DSP 261
           P+P  S +   Y +++    F+     LV+ E+  FT+  ++ + R      G+V   S 
Sbjct: 131 PDPSDSTMAIPYAVTKSAMFFFAATSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSG 190

Query: 262 VMIVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMF 441
           ++++    ++    K E          +     TY      L  +S FI  ++   +++F
Sbjct: 191 LLMLVGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGFITTEVAGTYAIF 250

Query: 442 I 444
           +
Sbjct: 251 L 251



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 473 GCLAVPGGLLMNML*IAVMSSPINCEITSNSLGCSP*VMNTSSYKISWSLLMYSSGF 303
           G + +  GLLM ++ + +  S    E+ S     S       +Y+  +S L+Y SGF
Sbjct: 183 GVVFIVSGLLM-LVGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLLYVSGF 238


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 571 DSHYPY*HGPRQSMSL 524
           ++H+P  HG RQS S+
Sbjct: 79  ETHHPIRHGRRQSRSM 94


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 367 GEHPRLLDVISQFIGDDITAIHSMFINKPP 456
           G+   + D +S FI   ITAI    IN+ P
Sbjct: 47  GDLKGIKDKLSHFIESGITAIWLSPINRSP 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +1

Query: 244 GIVDSPVMIVKEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD--D 417
           G+  S V+I  ++         E   NKL+  L   +   + +HP +L  + + I D   
Sbjct: 338 GLFCSVVVIAADRPGLRNTELVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRT 397

Query: 418 ITAIHS 435
           +  +HS
Sbjct: 398 LNTLHS 403


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 631 PAHHHGGIKYLAYETLE*HTDSHY 560
           P    G   Y  Y+TLE   + HY
Sbjct: 6   PERKRGRQTYTRYQTLELEKEFHY 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,034
Number of Sequences: 438
Number of extensions: 4574
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)