Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0937
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   170   1e-43
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   167   1e-42
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    29   0.57 
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    28   1.00 
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   3.0  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   7.0  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.0  

>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  170 bits (414), Expect = 1e-43
 Identities = 79/114 (69%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
 Frame = +1

Query: 73  KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 249
           K+GINGFGRIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5   KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64

Query: 250 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKK 411
           G LV++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+
Sbjct: 65  GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKR 118



 Score =  103 bits (246), Expect = 3e-23
 Identities = 52/78 (66%), Positives = 57/78 (73%)
 Frame = +2

Query: 407 KKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMX 586
           K+VIISAPS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM 
Sbjct: 117 KRVIISAPSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176

Query: 587 XXXXXXXXXXXXDGPSGK 640
                       DGPS K
Sbjct: 177 TVHATTATQKTVDGPSKK 194


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  167 bits (406), Expect = 1e-42
 Identities = 78/114 (68%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
 Frame = +1

Query: 73  KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 249
           K+GINGFGRIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE + 
Sbjct: 5   KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64

Query: 250 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKK 411
           G LV++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+
Sbjct: 65  GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKR 118



 Score =  107 bits (256), Expect = 2e-24
 Identities = 54/78 (69%), Positives = 58/78 (74%)
 Frame = +2

Query: 407 KKVIISAPSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMX 586
           K+VIISAPS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM 
Sbjct: 117 KRVIISAPSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMT 176

Query: 587 XXXXXXXXXXXXDGPSGK 640
                       DGPS K
Sbjct: 177 TVHATTATQKTVDGPSKK 194


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 278 LPFSQKGTLRPFHGEKLGLNML*SLLVSLPLQIKHLLTWREVLKKVIISAPSADAP 445
           L  + +GT    HG       L S + +L L I+  L+WR++    + SA   D+P
Sbjct: 355 LTTNPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQHITVYSASPFDSP 410


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 362 LPLQIKHLLTWREVLKKVIISAPSADAPMFVVGVNLEAYDPSFKVISNAS 511
           L + ++HL+++ E L  +++S P+   P+F   V   A    ++   NAS
Sbjct: 64  LNIDLRHLISYNEDLAHLLLSQPTDILPLFESAVTTVAKRLLYRSQENAS 113


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 279 NFVTVNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 124
           +F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS L  +
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 622 NSFLCNSCGMNSSHQ 578
           NS LCN+CG+   H+
Sbjct: 29  NSLLCNACGLYQKHR 43


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 282 GNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKTDERVIYSDHL-SSLFNRSTEHQT 106
           GN  +VN+K+  +N+N   KTA        ++H+    E ++    L SSLF+ +  ++ 
Sbjct: 519 GNIFSVNSKKHSVNINA--KTAAN----NGLSHLQNFSEELLKKRKLFSSLFSNNVSYKK 572

Query: 105 ANAAK 91
           +   K
Sbjct: 573 SKKLK 577


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 88  GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 198
           GF RI    +R   EKG QVV   D  I  + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
 Frame = +1

Query: 55  LADNMSKIGINGFGRIGRLVLRASIEKGAQVVAINDPFIGLD------YMVYLFKYDSTH 216
           + D+  ++ +N F  +G+L++  + ++    +  ND    ++      YM Y+F+  +  
Sbjct: 515 VGDHTGQLWLNVFDDVGKLIMHKTADE-LNDLQENDENAFMNCMAEACYMPYIFQCRAKQ 573

Query: 217 GRFKGSVEVQDGFLVVN 267
             FKG + V+   + +N
Sbjct: 574 DNFKGEMRVRYTVMSIN 590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,375
Number of Sequences: 5004
Number of extensions: 58555
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)