Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0937
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   1.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 625 INSFLCNSCGMNSSHQALNNFKVIMNNL 542
           I S L NSC  ++++   NN+K +  N+
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKLYYNI 330


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 285 NGNFVTVNNKESILNLNTALKTAMGGIILEKI 190
           N N       E +LN+  + +T   GI  EK+
Sbjct: 476 NNNMAATYMNECLLNIQKSPRTLTLGIFAEKL 507


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 288 ENGNFVTVNNKESILNLNTALKTAMG 211
           ENG     +N  S L ++  L+TAMG
Sbjct: 171 ENGKEFDCHNYMSELTVDILLETAMG 196


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 441 ASALGADIITFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPWNGL 304
           A+A+ +  I     S +  R   C+G  T+  +N F      +NGL
Sbjct: 382 AAAVQSSSIVSSPDSARHQRIGGCNGLHTTTAHNRFLGGIGGYNGL 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,052
Number of Sequences: 438
Number of extensions: 3922
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)