Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0936
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ... 28 1.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 1.9
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 3.3
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 25 7.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 10.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 10.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 10.0
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 25 10.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 10.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 10.0
>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 347 RCKGSHKEFKKCIRNKQVSKEKS 415
RCKG+ K+FK C+ K + E++
Sbjct: 64 RCKGNFKDFKWCLSTKSKAHEEA 86
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 345 EDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVXXXXXXXXXXXXSVFSLLEIEN 524
E ++ TK ++N+ +K +KKK + +S+D E S L+ E
Sbjct: 68 ETIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAEEDEEKDKDSA-GLINDEE 126
Query: 525 DVSPPEAPMSSE 560
D SP + + E
Sbjct: 127 DKSPAKQSVLEE 138
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Frame = +3
Query: 342 DEDVKEVTKNLKNVSVTNKSQKK----KADVTSEDESDSE 449
+E KEV KNL+N S+T K+ ++ +A+ TS D+S SE
Sbjct: 33 EEREKEVLKNLQN-SLTGKTAEENLNDEANHTSSDKSKSE 71
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 560 R*KTGPEESCTRKERNHRKKRQESQKKEG 646
R KT E+ +KER +K+Q+ KK+G
Sbjct: 176 RVKTKKEKEREKKEREKLRKKQQQAKKKG 204
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 174 KAKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSD 290
K KKGKKN+ + SD E+ + + + +++ + + D
Sbjct: 58 KKKKGKKNKGNKNQVSDDESQELESPQGPKELTAVTELD 96
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 566 KTGPEESCTRKERNHRKKRQESQKKEG 646
K +E+ RK N KKR++ QKKEG
Sbjct: 343 KKEQDENVRRKREN--KKRRKDQKKEG 367
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 150 KILNINMGKAKKGKKNQTTEEGDSDIETTNIS 245
++ N N+GK KKN TT ++ TN+S
Sbjct: 205 QLQNKNLGKESLSKKNNTT--NSRNLRKTNVS 234
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 150 KILNINMGKAKKGKKNQTTEEGDSDIETTNIS 245
++ N N+GK KKN TT ++ TN+S
Sbjct: 205 QLQNKNLGKESLSKKNNTT--NSRNLRKTNVS 234
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 150 KILNINMGKAKKGKKNQTTEEGDSDIETTNIS 245
++ N N+GK KKN TT ++ TN+S
Sbjct: 205 QLQNKNLGKESLSKKNNTT--NSRNLRKTNVS 234
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 189 KKNQTTEEGDSDIETTNISNAKPV 260
KKN+ E DSD E IS PV
Sbjct: 19 KKNEEDESNDSDKEDGEISEDDPV 42
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 212 LFSGLILLALFCFTHIDIQYLY*VTIPVL*CSVIAYFAISI 90
+F+ I + F I++QY+ ++I VL + +A+F +I
Sbjct: 1422 IFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNI 1462
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 150 KILNINMGKAKKGKKNQTTEEGDSDIETTNIS 245
++ N N+GK KKN TT ++ TN+S
Sbjct: 205 QLQNKNLGKESLSKKNNTT--NSRNLRKTNVS 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,564
Number of Sequences: 5004
Number of extensions: 28659
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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