Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0936
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    29   3.4  
12_01_1110 + 11756814-11757485,11757566-11757644,11757705-117579...    28   5.9  

>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 342 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSE 449
           DEDVK+     K V      +   +D +SE++SD E
Sbjct: 379 DEDVKQKQTQAKKVQAPVAQESSSSDESSEEDSDME 414


>12_01_1110 +
           11756814-11757485,11757566-11757644,11757705-11757991,
           11758072-11758131,11758311-11758976
          Length = 587

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 174 KAKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVD 284
           K KKGK+         DIETT  +N + V +VK  +D
Sbjct: 455 KLKKGKQRLVDRRERKDIETTIQANRQLVHEVKSKLD 491


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,811
Number of Sequences: 37544
Number of extensions: 162948
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)