Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0936
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 31 0.99
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 31 0.99
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 30 1.3
AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical ... 29 2.3
Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc... 29 4.0
U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical p... 28 7.0
U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical p... 28 7.0
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 30.7 bits (66), Expect = 0.99
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +3
Query: 177 AKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVK 356
AKK K + + E+ D + E+ S+ K ++ K +SD +D+ K
Sbjct: 56 AKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKK 115
Query: 357 EVTKNLKNVSVTNKSQKKKADVTSEDE-SDSELE 455
E KS+KK+ +SEDE SD E E
Sbjct: 116 E------------KSKKKRTTSSSEDEDSDEERE 137
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 30.7 bits (66), Expect = 0.99
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +3
Query: 177 AKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVK 356
AKK K + + E+ D + E+ S+ K ++ K +SD +D+ K
Sbjct: 56 AKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKK 115
Query: 357 EVTKNLKNVSVTNKSQKKKADVTSEDE-SDSELE 455
E KS+KK+ +SEDE SD E E
Sbjct: 116 E------------KSKKKRTTSSSEDEDSDEERE 137
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 189 KKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVKEVTK 368
KK++ ++ D D E K + KK D D DED + K
Sbjct: 295 KKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDDDDDDEKEKKDKKKKDDKDDDEDEDKDDK 354
Query: 369 NLKNVSVTN---KSQKKKADVTSEDESDSE 449
K V + K +KKK D EDE D +
Sbjct: 355 KKKKDDVDDDMKKDKKKKEDDDKEDEDDKK 384
>AF003130-3|AAB54123.1| 849|Caenorhabditis elegans Hypothetical
protein F55A12.5 protein.
Length = 849
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 375 KNVSVTNKSQKKKADVTSEDESDSELE 455
+NV+++ S+K+ D + EDE D E+E
Sbjct: 572 QNVAISTPSKKESFDSSDEDEEDDEME 598
>Z92803-1|CAB07242.2| 384|Caenorhabditis elegans Hypothetical
protein K01G5.1 protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +3
Query: 345 EDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVXXXXXXXXXXXXSVFSLLEIEN 524
E++ K L K Q+K+ E+E DS+ + E EN
Sbjct: 283 ENIMNTAKELLTYLKRKKQQQKQEAEKQEEEKDSDDDEKPHECDDHHHHDHEDEPEEPEN 342
Query: 525 DVSPPEAPMSSEDEKPV 575
D + PEA S++E+ +
Sbjct: 343 DSNVPEAEEKSDEEQEI 359
>AF304126-1|AAG50239.1| 384|Caenorhabditis elegans RING and zinc
finger protein protein.
Length = 384
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = +3
Query: 345 EDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVXXXXXXXXXXXXSVFSLLEIEN 524
E++ K L K Q+K+ E+E DS+ + E EN
Sbjct: 283 ENIMNTAKELLTYLKRKKQQQKQEAEKQEEEKDSDDDEKPHECDDHHHHDHEDEPEEPEN 342
Query: 525 DVSPPEAPMSSEDEKPV 575
D + PEA S++E+ +
Sbjct: 343 DSNVPEAEEKSDEEQEI 359
>U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical
protein C17G10.6b protein.
Length = 487
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = +3
Query: 174 KAKKGKK----NQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXI 341
K KKGKK + E+ D D + ++ + K+ K +D +
Sbjct: 298 KGKKGKKKNKDDDEDEDEDDDEDNGDLERVDGIVKIPKAIDGNTDDHEEDYEDEDEE--- 354
Query: 342 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSE 449
+ED E +N + K+ +KK + E++ + E
Sbjct: 355 EEDDNEDDENSRKKKKGRKNGRKKNNEDEEEDDNDE 390
>U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical
protein C17G10.6a protein.
Length = 683
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Frame = +3
Query: 174 KAKKGKK----NQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXI 341
K KKGKK + E+ D D + ++ + K+ K +D +
Sbjct: 349 KGKKGKKKNKDDDEDEDEDDDEDNGDLERVDGIVKIPKAIDGNTDDHEEDYEDEDEE--- 405
Query: 342 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSE 449
+ED E +N + K+ +KK + E++ + E
Sbjct: 406 EEDDNEDDENSRKKKKGRKNGRKKNNEDEEEDDNDE 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,254,797
Number of Sequences: 27780
Number of extensions: 165985
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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