Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0930
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...   249   2e-67
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...   248   4e-67
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   2.8  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   2.8  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   4.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   6.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.4  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   8.5  

>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score =  249 bits (610), Expect = 2e-67
 Identities = 120/164 (73%), Positives = 139/164 (84%), Gaps = 1/164 (0%)
 Frame = +1

Query: 52  ISKIGINGFCRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 228
           I K+GINGF RIGR+VLR +I  G  QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE 
Sbjct: 3   IPKVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVET 62

Query: 229 QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 408
           + G LV++G+ I V +ERDP  I W  +GAEYV+ESTGVFTT + ASAHL+GGAK+VIIS
Sbjct: 63  KGGKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIIS 122

Query: 409 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHD 540
           APS DAPMFVVGVNLE ++PS KVISNASCTTNCLAPLAKVI+D
Sbjct: 123 APSKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVIND 166



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +2

Query: 512 LPHLQRLFMINFEIVEGLMTTVHATTATQK 601
           L  L ++    F I EGLMTTVHATTATQK
Sbjct: 157 LAPLAKVINDTFGIEEGLMTTVHATTATQK 186


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score =  248 bits (608), Expect = 4e-67
 Identities = 119/164 (72%), Positives = 139/164 (84%), Gaps = 1/164 (0%)
 Frame = +1

Query: 52  ISKIGINGFCRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEV 228
           I K+GINGF RIGR+VLR A + K  QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE+
Sbjct: 3   IPKVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEI 62

Query: 229 QDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIIS 408
           +DG LV++GN I V +ERDP  I W  +GA+YV+ESTGVFTT + ASAHL+GGAK+VIIS
Sbjct: 63  KDGKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIIS 122

Query: 409 APSADAPMFVVGVNLEAYDPSFKVISNASCTTNCLAPLAKVIHD 540
           APS DAPM+VVGVN E ++PS KVISNASCTTNCLAPLAKVI+D
Sbjct: 123 APSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVIND 166



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +2

Query: 512 LPHLQRLFMINFEIVEGLMTTVHATTATQK 601
           L  L ++    F I EGLMTTVHATTATQK
Sbjct: 157 LAPLAKVINDTFGIEEGLMTTVHATTATQK 186


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 49  NISKIGINGFCRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 183
           +I      GF RI    +R   EKG QVV   D  I  + + +L+
Sbjct: 290 SIVHYSFQGFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 264 NFVTVNNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLSSLFNR 109
           +F  + N+ESIL+L   L +     + E I++IV+   +D R     HLS L  +
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLSVLLQK 392


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 423 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPWNGLRVPF*E-NGNFVTVN 247
           + +G  +N  +S    +  C +C G     + ++ +P F     +R+P    NGN  T+ 
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGFR--QQMRMPCNACNGNGRTIK 210

Query: 246 NK 241
           +K
Sbjct: 211 HK 212


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 267 GNFVTVNNKESILNLNTALKTAMGGIILEKINHIVKTDERVIYSDHL-SSLFNRSTEHQT 91
           GN  +VN+K+  +N+N   KTA        ++H+    E ++    L SSLF+ +  ++ 
Sbjct: 519 GNIFSVNSKKHSVNINA--KTAAN----NGLSHLQNFSEELLKKRKLFSSLFSNNVSYKK 572

Query: 90  ANAAK 76
           +   K
Sbjct: 573 SKKLK 577


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 491 LLAPQTVLPHLQRLFMINFEIVEGLMTTVHAT 586
           +L P  + P +     + FEI   L T VHAT
Sbjct: 87  VLKPSALFPAIAPFLFVVFEIPVALNTFVHAT 118


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 11  WSVIQQIFYNLPITYQKLESMDFAALAVWCSVLLLKRELKWS 136
           WS+ +  +Y+  ++Y  L+  DF    V   ++   +  KWS
Sbjct: 344 WSISEAFYYDHIVSYYMLKQPDFVE-GVNAQLITKTKNPKWS 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,816
Number of Sequences: 5004
Number of extensions: 55949
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)