Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0928
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.88
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 1.2
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 27 2.7
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 3.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 3.5
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 26 4.7
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 4.7
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.7
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 26 4.7
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.2
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +3
Query: 60 KFSLCTFTGRYFHFEM----SSPRPKSPRTPVLPKKEEKE 167
+FS C FT + HFE PK + + KK+E+E
Sbjct: 275 EFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEE 314
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 581 SLVRYIKTSTKMECGFDTFKKYCFDSSFAR 670
++ RY KT T ++CG DT + D +F R
Sbjct: 278 AITRYRKTPTCIQCGADTKGLFSVDKNFDR 307
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 239 FSLYILNFFNPFFAPYCTNFVPKGLFFL 156
F LY++N F+ ++A F GL FL
Sbjct: 309 FGLYVVNLFDTYYATKVLGFEGHGLAFL 336
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 613 NGVWIRYIQKVLFRFFICS 669
NGVW R IQKV++ + + S
Sbjct: 97 NGVWDRSIQKVVYLYLLAS 115
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 153 FWEAQEYEVILGVVKTFRNENT 88
F+EA+ Y VIL +T +N NT
Sbjct: 528 FFEAEWYRVILDEAQTIKNRNT 549
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 412 ASSSLIQSIKT*IRSLTLGSSSDRGSIIALSSFSFKVYSSGGISGAVGLPG 260
++++ + ++T S + S + I+ F F VYS SG G PG
Sbjct: 208 SNTNSVNPLQTTFESTNIQEISQSRTKISKPKFKFSVYSDADGSGKDGQPG 258
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 273 TAPEIPPEEYTLNENEERAI 332
+AP I PEEYT +E + RA+
Sbjct: 523 SAPYIAPEEYTESEFDPRAV 542
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 SPTAPEIPPEEY-TLNENEERAIIEPRSLEDPRVRDLIQVLIDWINDELASQRIIVQDII 443
+P+AP PP+EY LN + + ++ L+ + ++ +D I E SQ I ++I
Sbjct: 166 NPSAPPPPPQEYRQLNVTDALSYLDLVKLQFHQEPEIYNEFLD-IMKEFKSQAIETPEVI 224
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = -1
Query: 359 WIFK*SRFDNSPFFVLIQSIFFRGNLWCSWTAWRINSIFPFSLYILNFFNPFFAP 195
WIF SR F+L SI + G L S AWR + +F I + F FF P
Sbjct: 180 WIFPESR----RLFILSYSISY-GTLAWSVVAWRNSLLFHSIDKITSLFIHFFPP 229
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 292 LKNIL*MRTKKGLLSNLDHLKIQGSEI 372
LK I M+ G+ + DH+ +QG E+
Sbjct: 214 LKEIEEMKDSNGMFCDADHVPLQGQEL 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,043
Number of Sequences: 5004
Number of extensions: 55802
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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